CAM: an alignment-free method to recover phylogenies using codon aversion motifs
Background Common phylogenomic approaches for recovering phylogenies are often time-consuming and require annotations for orthologous gene relationships that are not always available. In contrast, alignment-free phylogenomic approaches typically use structure and oligomer frequencies to calculate pa...
Main Authors: | Justin B. Miller, Lauren M. McKinnon, Michael F. Whiting, Perry G. Ridge |
---|---|
Format: | Article |
Language: | English |
Published: |
PeerJ Inc.
2019-06-01
|
Series: | PeerJ |
Subjects: | |
Online Access: | https://peerj.com/articles/6984.pdf |
Similar Items
-
Sturnidae <i>sensu lato</i> Mitogenomics: Novel Insights into Codon Aversion, Selection, and Phylogeny
by: Shiyun Han, et al.
Published: (2024-09-01) -
Measurement of average decoding rates of the 61 sense codons in vivo
by: Justin Gardin, et al.
Published: (2014-10-01) -
Analysis of codon usage bias of thioredoxin in apicomplexan protozoa
by: Dawei Wang, et al.
Published: (2023-11-01) -
Analysis of codon usage patterns in 48 Aconitum species
by: Meihua Yang, et al.
Published: (2023-11-01) -
Genome-wide analysis of the synonymous codon usage patterns in apple
by: Ning LI, et al.
Published: (2016-05-01)