Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets

Sarcomas are rare tumours with many different subtypes and clinical outcomes; a broader knowledge of their genetic features is required. Here, the authors analyse 2138 soft tissue and bone sarcomas across 45 subtypes using MSK-IMPACT targeted sequencing and find genomic groups that are distinct from...

Full description

Bibliographic Details
Main Authors: Benjamin A. Nacev, Francisco Sanchez-Vega, Shaleigh A. Smith, Cristina R. Antonescu, Evan Rosenbaum, Hongyu Shi, Cerise Tang, Nicholas D. Socci, Satshil Rana, Rodrigo Gularte-Mérida, Ahmet Zehir, Mrinal M. Gounder, Timothy G. Bowler, Anisha Luthra, Bhumika Jadeja, Azusa Okada, Jonathan A. Strong, Jake Stoller, Jason E. Chan, Ping Chi, Sandra P. D’Angelo, Mark A. Dickson, Ciara M. Kelly, Mary Louise Keohan, Sujana Movva, Katherine Thornton, Paul A. Meyers, Leonard H. Wexler, Emily K. Slotkin, Julia L. Glade Bender, Neerav N. Shukla, Martee L. Hensley, John H. Healey, Michael P. La Quaglia, Kaled M. Alektiar, Aimee M. Crago, Sam S. Yoon, Brian R. Untch, Sarah Chiang, Narasimhan P. Agaram, Meera R. Hameed, Michael F. Berger, David B. Solit, Nikolaus Schultz, Marc Ladanyi, Samuel Singer, William D. Tap
Format: Article
Language:English
Published: Nature Portfolio 2022-06-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-022-30453-x
_version_ 1811342903297966080
author Benjamin A. Nacev
Francisco Sanchez-Vega
Shaleigh A. Smith
Cristina R. Antonescu
Evan Rosenbaum
Hongyu Shi
Cerise Tang
Nicholas D. Socci
Satshil Rana
Rodrigo Gularte-Mérida
Ahmet Zehir
Mrinal M. Gounder
Timothy G. Bowler
Anisha Luthra
Bhumika Jadeja
Azusa Okada
Jonathan A. Strong
Jake Stoller
Jason E. Chan
Ping Chi
Sandra P. D’Angelo
Mark A. Dickson
Ciara M. Kelly
Mary Louise Keohan
Sujana Movva
Katherine Thornton
Paul A. Meyers
Leonard H. Wexler
Emily K. Slotkin
Julia L. Glade Bender
Neerav N. Shukla
Martee L. Hensley
John H. Healey
Michael P. La Quaglia
Kaled M. Alektiar
Aimee M. Crago
Sam S. Yoon
Brian R. Untch
Sarah Chiang
Narasimhan P. Agaram
Meera R. Hameed
Michael F. Berger
David B. Solit
Nikolaus Schultz
Marc Ladanyi
Samuel Singer
William D. Tap
author_facet Benjamin A. Nacev
Francisco Sanchez-Vega
Shaleigh A. Smith
Cristina R. Antonescu
Evan Rosenbaum
Hongyu Shi
Cerise Tang
Nicholas D. Socci
Satshil Rana
Rodrigo Gularte-Mérida
Ahmet Zehir
Mrinal M. Gounder
Timothy G. Bowler
Anisha Luthra
Bhumika Jadeja
Azusa Okada
Jonathan A. Strong
Jake Stoller
Jason E. Chan
Ping Chi
Sandra P. D’Angelo
Mark A. Dickson
Ciara M. Kelly
Mary Louise Keohan
Sujana Movva
Katherine Thornton
Paul A. Meyers
Leonard H. Wexler
Emily K. Slotkin
Julia L. Glade Bender
Neerav N. Shukla
Martee L. Hensley
John H. Healey
Michael P. La Quaglia
Kaled M. Alektiar
Aimee M. Crago
Sam S. Yoon
Brian R. Untch
Sarah Chiang
Narasimhan P. Agaram
Meera R. Hameed
Michael F. Berger
David B. Solit
Nikolaus Schultz
Marc Ladanyi
Samuel Singer
William D. Tap
author_sort Benjamin A. Nacev
collection DOAJ
description Sarcomas are rare tumours with many different subtypes and clinical outcomes; a broader knowledge of their genetic features is required. Here, the authors analyse 2138 soft tissue and bone sarcomas across 45 subtypes using MSK-IMPACT targeted sequencing and find genomic groups that are distinct from histological subgroups.
first_indexed 2024-04-13T19:20:17Z
format Article
id doaj.art-89c42dddd0f647ee90d7805699d564f6
institution Directory Open Access Journal
issn 2041-1723
language English
last_indexed 2024-04-13T19:20:17Z
publishDate 2022-06-01
publisher Nature Portfolio
record_format Article
series Nature Communications
spelling doaj.art-89c42dddd0f647ee90d7805699d564f62022-12-22T02:33:34ZengNature PortfolioNature Communications2041-17232022-06-0113111510.1038/s41467-022-30453-xClinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targetsBenjamin A. Nacev0Francisco Sanchez-Vega1Shaleigh A. Smith2Cristina R. Antonescu3Evan Rosenbaum4Hongyu Shi5Cerise Tang6Nicholas D. Socci7Satshil Rana8Rodrigo Gularte-Mérida9Ahmet Zehir10Mrinal M. Gounder11Timothy G. Bowler12Anisha Luthra13Bhumika Jadeja14Azusa Okada15Jonathan A. Strong16Jake Stoller17Jason E. Chan18Ping Chi19Sandra P. D’Angelo20Mark A. Dickson21Ciara M. Kelly22Mary Louise Keohan23Sujana Movva24Katherine Thornton25Paul A. Meyers26Leonard H. Wexler27Emily K. Slotkin28Julia L. Glade Bender29Neerav N. Shukla30Martee L. Hensley31John H. Healey32Michael P. La Quaglia33Kaled M. Alektiar34Aimee M. Crago35Sam S. Yoon36Brian R. Untch37Sarah Chiang38Narasimhan P. Agaram39Meera R. Hameed40Michael F. Berger41David B. Solit42Nikolaus Schultz43Marc Ladanyi44Samuel Singer45William D. Tap46Department of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Pediatrics, Memorial Sloan Kettering Cancer CenterDepartment of Pediatrics, Memorial Sloan Kettering Cancer CenterDepartment of Pediatrics, Memorial Sloan Kettering Cancer CenterDepartment of Pediatrics, Memorial Sloan Kettering Cancer CenterDepartment of Pediatrics, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterMarie-Josée and Henry R. Kravis Center for Molecular Oncology, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer CenterDepartment of Pathology, Memorial Sloan Kettering Cancer CenterDepartment of Surgery, Memorial Sloan Kettering Cancer CenterDepartment of Medicine, Memorial Sloan Kettering Cancer CenterSarcomas are rare tumours with many different subtypes and clinical outcomes; a broader knowledge of their genetic features is required. Here, the authors analyse 2138 soft tissue and bone sarcomas across 45 subtypes using MSK-IMPACT targeted sequencing and find genomic groups that are distinct from histological subgroups.https://doi.org/10.1038/s41467-022-30453-x
spellingShingle Benjamin A. Nacev
Francisco Sanchez-Vega
Shaleigh A. Smith
Cristina R. Antonescu
Evan Rosenbaum
Hongyu Shi
Cerise Tang
Nicholas D. Socci
Satshil Rana
Rodrigo Gularte-Mérida
Ahmet Zehir
Mrinal M. Gounder
Timothy G. Bowler
Anisha Luthra
Bhumika Jadeja
Azusa Okada
Jonathan A. Strong
Jake Stoller
Jason E. Chan
Ping Chi
Sandra P. D’Angelo
Mark A. Dickson
Ciara M. Kelly
Mary Louise Keohan
Sujana Movva
Katherine Thornton
Paul A. Meyers
Leonard H. Wexler
Emily K. Slotkin
Julia L. Glade Bender
Neerav N. Shukla
Martee L. Hensley
John H. Healey
Michael P. La Quaglia
Kaled M. Alektiar
Aimee M. Crago
Sam S. Yoon
Brian R. Untch
Sarah Chiang
Narasimhan P. Agaram
Meera R. Hameed
Michael F. Berger
David B. Solit
Nikolaus Schultz
Marc Ladanyi
Samuel Singer
William D. Tap
Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
Nature Communications
title Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
title_full Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
title_fullStr Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
title_full_unstemmed Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
title_short Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
title_sort clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
url https://doi.org/10.1038/s41467-022-30453-x
work_keys_str_mv AT benjaminanacev clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT franciscosanchezvega clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT shaleighasmith clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT cristinarantonescu clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT evanrosenbaum clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT hongyushi clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT cerisetang clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT nicholasdsocci clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT satshilrana clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT rodrigogulartemerida clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT ahmetzehir clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT mrinalmgounder clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT timothygbowler clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT anishaluthra clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT bhumikajadeja clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT azusaokada clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT jonathanastrong clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT jakestoller clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT jasonechan clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT pingchi clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT sandrapdangelo clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT markadickson clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT ciaramkelly clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT marylouisekeohan clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT sujanamovva clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT katherinethornton clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT paulameyers clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT leonardhwexler clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT emilykslotkin clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT julialgladebender clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT neeravnshukla clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT marteelhensley clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT johnhhealey clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT michaelplaquaglia clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT kaledmalektiar clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT aimeemcrago clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT samsyoon clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT brianruntch clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT sarahchiang clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT narasimhanpagaram clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT meerarhameed clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT michaelfberger clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT davidbsolit clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT nikolausschultz clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT marcladanyi clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT samuelsinger clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets
AT williamdtap clinicalsequencingofsofttissueandbonesarcomasdelineatesdiversegenomiclandscapesandpotentialtherapeutictargets