The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae)
In this study, the complete chloroplast genome of Pholidota yunnanensis is presented, which represents first complete plastid genome of the genus Pholidota in the subtribe Coelogyninae. The chloroplast genome size is 159,729 bp, including a GC content of 37.3% and 135 genes (89 protein-coding genes,...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1720533 |
| _version_ | 1827773060888920064 |
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| author | Qiu-Ping Wu Wan-Yao Wang Guo-Qiang Zhang Song-Jun Zeng Lin Li Zhong-Jian Liu |
| author_facet | Qiu-Ping Wu Wan-Yao Wang Guo-Qiang Zhang Song-Jun Zeng Lin Li Zhong-Jian Liu |
| author_sort | Qiu-Ping Wu |
| collection | DOAJ |
| description | In this study, the complete chloroplast genome of Pholidota yunnanensis is presented, which represents first complete plastid genome of the genus Pholidota in the subtribe Coelogyninae. The chloroplast genome size is 159,729 bp, including a GC content of 37.3% and 135 genes (89 protein-coding genes, 38 tRNA genes, 8 rRNA genes). The genome structure is typical quadripartite, consisting of a pair of inverted repeat regions (26,638 bp) separated by a large single-copy region (LSC, 87,610 bp) and a small single-copy region (SSC, 18,843 bp). Phylogenetic analysis among 15 species based on cp genomes recovered a well-supported phylogenetic tree and indicated a close relationship between Pholidota yunnanensis and Pleione bulbocodioides. |
| first_indexed | 2024-03-11T13:17:40Z |
| format | Article |
| id | doaj.art-89e1eb99e0c940ba82dab1cfcd129b18 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:40Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-89e1eb99e0c940ba82dab1cfcd129b182023-11-03T11:00:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532469247010.1080/23802359.2020.17205331720533The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae)Qiu-Ping Wu0Wan-Yao Wang1Guo-Qiang Zhang2Song-Jun Zeng3Lin Li4Zhong-Jian Liu5Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesHangzhou Heyi Gene Technology Co. LtdKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of ShenzhenKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of SciencesKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry UniversityIn this study, the complete chloroplast genome of Pholidota yunnanensis is presented, which represents first complete plastid genome of the genus Pholidota in the subtribe Coelogyninae. The chloroplast genome size is 159,729 bp, including a GC content of 37.3% and 135 genes (89 protein-coding genes, 38 tRNA genes, 8 rRNA genes). The genome structure is typical quadripartite, consisting of a pair of inverted repeat regions (26,638 bp) separated by a large single-copy region (LSC, 87,610 bp) and a small single-copy region (SSC, 18,843 bp). Phylogenetic analysis among 15 species based on cp genomes recovered a well-supported phylogenetic tree and indicated a close relationship between Pholidota yunnanensis and Pleione bulbocodioides.http://dx.doi.org/10.1080/23802359.2020.1720533pholidota yunnanensisorchidaceaecomplete chloroplast genomeillumina sequencingphylogeny |
| spellingShingle | Qiu-Ping Wu Wan-Yao Wang Guo-Qiang Zhang Song-Jun Zeng Lin Li Zhong-Jian Liu The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) Mitochondrial DNA. Part B. Resources pholidota yunnanensis orchidaceae complete chloroplast genome illumina sequencing phylogeny |
| title | The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) |
| title_full | The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) |
| title_fullStr | The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) |
| title_full_unstemmed | The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) |
| title_short | The complete chloroplast genome of Pholidota yunnanensis Rolfe (Orchidaceae: Coelogyninae) |
| title_sort | complete chloroplast genome of pholidota yunnanensis rolfe orchidaceae coelogyninae |
| topic | pholidota yunnanensis orchidaceae complete chloroplast genome illumina sequencing phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2020.1720533 |
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