A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors

Research into histone deacetylases (HDACs) has experienced a remarkable surge in recent years. These enzymes are key regulators of several fundamental biological processes, often associated with severe and potentially fatal diseases. Inhibition of their activity represents a promising therapeutic ap...

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Main Authors: Aliki Drakontaeidi, Eleni Pontiki
Format: Article
Language:English
Published: MDPI AG 2023-11-01
Series:Pharmaceuticals
Subjects:
Online Access:https://www.mdpi.com/1424-8247/16/12/1639
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author Aliki Drakontaeidi
Eleni Pontiki
author_facet Aliki Drakontaeidi
Eleni Pontiki
author_sort Aliki Drakontaeidi
collection DOAJ
description Research into histone deacetylases (HDACs) has experienced a remarkable surge in recent years. These enzymes are key regulators of several fundamental biological processes, often associated with severe and potentially fatal diseases. Inhibition of their activity represents a promising therapeutic approach and a prospective strategy for the development of new therapeutic agents. A critical aspect of their inhibition is to achieve selectivity in terms of enzyme isoforms, which is essential to improve treatment efficacy while reducing undesirable pleiotropic effects. The development of computational chemistry tools, particularly molecular docking, is greatly enhancing the precision of designing molecules with inherent potential for specific activity. Therefore, it was considered necessary to review the molecular docking studies conducted on the major isozymes of the enzyme in order to identify the specific interactions associated with each selective HDAC inhibitor. In particular, the most critical isozymes of HDAC (1, 2, 3, 6, and 8) have been thoroughly investigated within the scope of this review.
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spelling doaj.art-8a66533bb98e48809453a6a25dc642242023-12-22T14:31:16ZengMDPI AGPharmaceuticals1424-82472023-11-011612163910.3390/ph16121639A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective InhibitorsAliki Drakontaeidi0Eleni Pontiki1Department of Pharmaceutical Chemistry, School of Pharmacy, Faculty of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, GreeceDepartment of Pharmaceutical Chemistry, School of Pharmacy, Faculty of Health Sciences, Aristotle University of Thessaloniki, 54124 Thessaloniki, GreeceResearch into histone deacetylases (HDACs) has experienced a remarkable surge in recent years. These enzymes are key regulators of several fundamental biological processes, often associated with severe and potentially fatal diseases. Inhibition of their activity represents a promising therapeutic approach and a prospective strategy for the development of new therapeutic agents. A critical aspect of their inhibition is to achieve selectivity in terms of enzyme isoforms, which is essential to improve treatment efficacy while reducing undesirable pleiotropic effects. The development of computational chemistry tools, particularly molecular docking, is greatly enhancing the precision of designing molecules with inherent potential for specific activity. Therefore, it was considered necessary to review the molecular docking studies conducted on the major isozymes of the enzyme in order to identify the specific interactions associated with each selective HDAC inhibitor. In particular, the most critical isozymes of HDAC (1, 2, 3, 6, and 8) have been thoroughly investigated within the scope of this review.https://www.mdpi.com/1424-8247/16/12/1639histone deacetylasesmolecular dockingisoformsinteractionsenzyme inhibition
spellingShingle Aliki Drakontaeidi
Eleni Pontiki
A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
Pharmaceuticals
histone deacetylases
molecular docking
isoforms
interactions
enzyme inhibition
title A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
title_full A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
title_fullStr A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
title_full_unstemmed A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
title_short A Review on Molecular Docking on HDAC Isoforms: Novel Tool for Designing Selective Inhibitors
title_sort review on molecular docking on hdac isoforms novel tool for designing selective inhibitors
topic histone deacetylases
molecular docking
isoforms
interactions
enzyme inhibition
url https://www.mdpi.com/1424-8247/16/12/1639
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