Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability.
When non-linear models are fitted to experimental data, parameter estimates can be poorly constrained albeit being identifiable in principle. This means that along certain paths in parameter space, the log-likelihood does not exceed a given statistical threshold but remains bounded. This situation,...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2019-01-01
|
| Series: | PLoS ONE |
| Online Access: | https://doi.org/10.1371/journal.pone.0217837 |
| _version_ | 1819148329139830784 |
|---|---|
| author | Daniel Lill Jens Timmer Daniel Kaschek |
| author_facet | Daniel Lill Jens Timmer Daniel Kaschek |
| author_sort | Daniel Lill |
| collection | DOAJ |
| description | When non-linear models are fitted to experimental data, parameter estimates can be poorly constrained albeit being identifiable in principle. This means that along certain paths in parameter space, the log-likelihood does not exceed a given statistical threshold but remains bounded. This situation, denoted as practical non-identifiability, can be detected by Monte Carlo sampling or by systematic scanning using the profile likelihood method. In contrast, any method based on a Taylor expansion of the log-likelihood around the optimum, e.g., parameter uncertainty estimation by the Fisher Information Matrix, reveals no information about the boundedness at all. In this work, we present a geometric approach, approximating the original log-likelihood by geodesic coordinates of the model manifold. The Christoffel Symbols in the geodesic equation are fixed to those obtained from second order model sensitivities at the optimum. Based on three exemplary non-linear models we show that the information about the log-likelihood bounds and flat parameter directions can already be contained in this local information. Whereas the unbounded case represented by the Fisher Information Matrix is embedded in the geometric framework as vanishing Christoffel Symbols, non-vanishing constant Christoffel Symbols prove to define prototype non-linear models featuring boundedness and flat parameter directions of the log-likelihood. Finally, we investigate if those models could allow to approximate and replace computationally expensive objective functions originating from non-linear models by a surrogate objective function in parameter estimation problems. |
| first_indexed | 2024-12-22T13:43:59Z |
| format | Article |
| id | doaj.art-8a81145b3d5d4d89a5e967fdfbe61869 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-22T13:43:59Z |
| publishDate | 2019-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-8a81145b3d5d4d89a5e967fdfbe618692022-12-21T18:23:50ZengPublic Library of Science (PLoS)PLoS ONE1932-62032019-01-01146e021783710.1371/journal.pone.0217837Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability.Daniel LillJens TimmerDaniel KaschekWhen non-linear models are fitted to experimental data, parameter estimates can be poorly constrained albeit being identifiable in principle. This means that along certain paths in parameter space, the log-likelihood does not exceed a given statistical threshold but remains bounded. This situation, denoted as practical non-identifiability, can be detected by Monte Carlo sampling or by systematic scanning using the profile likelihood method. In contrast, any method based on a Taylor expansion of the log-likelihood around the optimum, e.g., parameter uncertainty estimation by the Fisher Information Matrix, reveals no information about the boundedness at all. In this work, we present a geometric approach, approximating the original log-likelihood by geodesic coordinates of the model manifold. The Christoffel Symbols in the geodesic equation are fixed to those obtained from second order model sensitivities at the optimum. Based on three exemplary non-linear models we show that the information about the log-likelihood bounds and flat parameter directions can already be contained in this local information. Whereas the unbounded case represented by the Fisher Information Matrix is embedded in the geometric framework as vanishing Christoffel Symbols, non-vanishing constant Christoffel Symbols prove to define prototype non-linear models featuring boundedness and flat parameter directions of the log-likelihood. Finally, we investigate if those models could allow to approximate and replace computationally expensive objective functions originating from non-linear models by a surrogate objective function in parameter estimation problems.https://doi.org/10.1371/journal.pone.0217837 |
| spellingShingle | Daniel Lill Jens Timmer Daniel Kaschek Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. PLoS ONE |
| title | Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. |
| title_full | Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. |
| title_fullStr | Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. |
| title_full_unstemmed | Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. |
| title_short | Local Riemannian geometry of model manifolds and its implications for practical parameter identifiability. |
| title_sort | local riemannian geometry of model manifolds and its implications for practical parameter identifiability |
| url | https://doi.org/10.1371/journal.pone.0217837 |
| work_keys_str_mv | AT daniellill localriemanniangeometryofmodelmanifoldsanditsimplicationsforpracticalparameteridentifiability AT jenstimmer localriemanniangeometryofmodelmanifoldsanditsimplicationsforpracticalparameteridentifiability AT danielkaschek localriemanniangeometryofmodelmanifoldsanditsimplicationsforpracticalparameteridentifiability |