The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis
In this study, the complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae was sequenced using samples collected from the Tamjin River (type locality), located in Jangheung-gun, Jeollanam-do, Republic of Korea. The complete mitochondrial genome of S. variegatus wakiyae includes 13 prot...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1742610 |
| _version_ | 1797639300634902528 |
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| author | Yong Hwi Kim Jae Hoon Kim Jong Yeon Park Mu-Sung Sung In-Chul Bang |
| author_facet | Yong Hwi Kim Jae Hoon Kim Jong Yeon Park Mu-Sung Sung In-Chul Bang |
| author_sort | Yong Hwi Kim |
| collection | DOAJ |
| description | In this study, the complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae was sequenced using samples collected from the Tamjin River (type locality), located in Jangheung-gun, Jeollanam-do, Republic of Korea. The complete mitochondrial genome of S. variegatus wakiyae includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region (D-loop), with a total length of 16,675 bp. The overall base nucleotide compositions encoded are 30.15% A, 26.71% C, 16.81% G, and 26.33% T with 56.48% A + T. The phylogenetic tree constructed using a neighbor-joining (NJ) method showed that S. variegatus wakiyae and S. variegatus microoculus are not sister groups, despite being subspecies of the same taxonomic species. Rather, S. variegatus wakiyae forms a sister group with S. hainanensis. |
| first_indexed | 2024-03-11T13:14:50Z |
| format | Article |
| id | doaj.art-8ad7d55a56f14b33abea3c4f40025a47 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:50Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8ad7d55a56f14b33abea3c4f40025a472023-11-03T13:50:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521580158110.1080/23802359.2020.17426101742610The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysisYong Hwi Kim0Jae Hoon Kim1Jong Yeon Park2Mu-Sung Sung3In-Chul Bang4Soonchunhyang UniversitySoonchunhyang UniversitySoonchunhyang UniversitySoonchunhyang UniversitySoonchunhyang UniversityIn this study, the complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae was sequenced using samples collected from the Tamjin River (type locality), located in Jangheung-gun, Jeollanam-do, Republic of Korea. The complete mitochondrial genome of S. variegatus wakiyae includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region (D-loop), with a total length of 16,675 bp. The overall base nucleotide compositions encoded are 30.15% A, 26.71% C, 16.81% G, and 26.33% T with 56.48% A + T. The phylogenetic tree constructed using a neighbor-joining (NJ) method showed that S. variegatus wakiyae and S. variegatus microoculus are not sister groups, despite being subspecies of the same taxonomic species. Rather, S. variegatus wakiyae forms a sister group with S. hainanensis.http://dx.doi.org/10.1080/23802359.2020.1742610cypriniformescyprinidaegobioninaesarcocheilichthys variegatus wakiyaemitochondrial genome |
| spellingShingle | Yong Hwi Kim Jae Hoon Kim Jong Yeon Park Mu-Sung Sung In-Chul Bang The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis Mitochondrial DNA. Part B. Resources cypriniformes cyprinidae gobioninae sarcocheilichthys variegatus wakiyae mitochondrial genome |
| title | The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis |
| title_full | The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis |
| title_fullStr | The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis |
| title_full_unstemmed | The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis |
| title_short | The complete mitochondrial genome of Sarcocheilichthys variegatus wakiyae (Cypriniformes, cyprinidae) and corresponding phylogenetic analysis |
| title_sort | complete mitochondrial genome of sarcocheilichthys variegatus wakiyae cypriniformes cyprinidae and corresponding phylogenetic analysis |
| topic | cypriniformes cyprinidae gobioninae sarcocheilichthys variegatus wakiyae mitochondrial genome |
| url | http://dx.doi.org/10.1080/23802359.2020.1742610 |
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