Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium
The monotypic genus Pseudomarrubium is perhaps the most poorly understood taxon within the subfamily Lamioideae (Lamiaceae). While advances in molecular phylogenetics have clarified the phylogeny and taxonomy of Lamioideae, the systematic placement of Pseudomarrubium remains unclear, as it has never...
| Main Authors: | , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2023-09-01
|
| Series: | Current Plant Biology |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2214662823000294 |
| _version_ | 1827583774644240384 |
|---|---|
| author | Yue Zhao Ya-Ping Chen Jing-Chen Yuan Alan J. Paton Maxim S. Nuraliev Fei Zhao Bryan T. Drew Yasaman Salmaki Orzimat T. Turginov Miao Sun Alexander N. Sennikov Xiang-Qin Yu Bo Li Chun-Lei Xiang |
| author_facet | Yue Zhao Ya-Ping Chen Jing-Chen Yuan Alan J. Paton Maxim S. Nuraliev Fei Zhao Bryan T. Drew Yasaman Salmaki Orzimat T. Turginov Miao Sun Alexander N. Sennikov Xiang-Qin Yu Bo Li Chun-Lei Xiang |
| author_sort | Yue Zhao |
| collection | DOAJ |
| description | The monotypic genus Pseudomarrubium is perhaps the most poorly understood taxon within the subfamily Lamioideae (Lamiaceae). While advances in molecular phylogenetics have clarified the phylogeny and taxonomy of Lamioideae, the systematic placement of Pseudomarrubium remains unclear, as it has never been tested using molecular phylogenetic analyses due to an inaccessibility of plant material. In this study, we used high-throughput next-generation sequencing to infer the systematic placement of Pseudomarrubium based on old herbarium collections as well as silica gel-dried leaves. Phylogenomic analyses demonstrate that Pseudomarrubium is a member of tribe Phlomideae and nested within Phlomoides, and a new combination, Phlomoides eremostachydioides, is proposed. The study highlights that herbarium-preserved samples, even very old ones, are invaluable resources that can be used to generate reliable genome-scale data and be used for molecular phylogenetic inquiries. |
| first_indexed | 2024-03-08T23:11:34Z |
| format | Article |
| id | doaj.art-8bc76ccf6fa94b4ea180be72fbaded91 |
| institution | Directory Open Access Journal |
| issn | 2214-6628 |
| language | English |
| last_indexed | 2024-03-08T23:11:34Z |
| publishDate | 2023-09-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Current Plant Biology |
| spelling | doaj.art-8bc76ccf6fa94b4ea180be72fbaded912023-12-15T07:24:27ZengElsevierCurrent Plant Biology2214-66282023-09-0135100300Museomics in Lamiaceae: Resolving the taxonomic mystery of PseudomarrubiumYue Zhao0Ya-Ping Chen1Jing-Chen Yuan2Alan J. Paton3Maxim S. Nuraliev4Fei Zhao5Bryan T. Drew6Yasaman Salmaki7Orzimat T. Turginov8Miao Sun9Alexander N. Sennikov10Xiang-Qin Yu11Bo Li12Chun-Lei Xiang13CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China; Ministry of Education Key Laboratory of Ecology and Resource Use of the Mongolian Plateau & Inner Mongolia Key Laboratory of Grassland Ecology, School of Ecology and Environment, Inner Mongolia University, Hohhot 010000, Inner Mongolia, ChinaCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, ChinaCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, ChinaRoyal Botanic Gardens, Kew, Richmond TW9 3AB, UKDepartment of Higher Plants, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow 119234, RussiaCAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chinese Academy of Sciences, Chengdu Institute of Biology, Chengdu 610000, Sichuan, ChinaDepartment of Biology, University of Nebraska-Kearney, Kearney, NE 68849, USACenter of Excellence in Phylogeny of Living Organisms, Department of Plant Science, College of Science, University of Tehran, P.O. Box 14155-6455, Tehran, IranInstitute of Botany, Academy of Sciences of the Republic of Uzbekistan, Tashkent 100047, Uzbekistan; Faculty of Biology, Department of Botany and Plant physiology, National University of Uzbekistan named after Mirzo Ulugbek, Tashkent 100174, UzbekistanNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan 430070, Hubei, ChinaBotanical Museum, Finnish Museum of Natural History, University of Helsinki, Helsinki 00014, FinlandCAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China; Corresponding authors.Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, Yunnan, China; Corresponding authors.CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China; Corresponding authors.The monotypic genus Pseudomarrubium is perhaps the most poorly understood taxon within the subfamily Lamioideae (Lamiaceae). While advances in molecular phylogenetics have clarified the phylogeny and taxonomy of Lamioideae, the systematic placement of Pseudomarrubium remains unclear, as it has never been tested using molecular phylogenetic analyses due to an inaccessibility of plant material. In this study, we used high-throughput next-generation sequencing to infer the systematic placement of Pseudomarrubium based on old herbarium collections as well as silica gel-dried leaves. Phylogenomic analyses demonstrate that Pseudomarrubium is a member of tribe Phlomideae and nested within Phlomoides, and a new combination, Phlomoides eremostachydioides, is proposed. The study highlights that herbarium-preserved samples, even very old ones, are invaluable resources that can be used to generate reliable genome-scale data and be used for molecular phylogenetic inquiries.http://www.sciencedirect.com/science/article/pii/S2214662823000294LamioideaeMolecular PhylogenyNext-generation sequencingPhlomideaePhlomoidesTaxonomy |
| spellingShingle | Yue Zhao Ya-Ping Chen Jing-Chen Yuan Alan J. Paton Maxim S. Nuraliev Fei Zhao Bryan T. Drew Yasaman Salmaki Orzimat T. Turginov Miao Sun Alexander N. Sennikov Xiang-Qin Yu Bo Li Chun-Lei Xiang Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium Current Plant Biology Lamioideae Molecular Phylogeny Next-generation sequencing Phlomideae Phlomoides Taxonomy |
| title | Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium |
| title_full | Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium |
| title_fullStr | Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium |
| title_full_unstemmed | Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium |
| title_short | Museomics in Lamiaceae: Resolving the taxonomic mystery of Pseudomarrubium |
| title_sort | museomics in lamiaceae resolving the taxonomic mystery of pseudomarrubium |
| topic | Lamioideae Molecular Phylogeny Next-generation sequencing Phlomideae Phlomoides Taxonomy |
| url | http://www.sciencedirect.com/science/article/pii/S2214662823000294 |
| work_keys_str_mv | AT yuezhao museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT yapingchen museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT jingchenyuan museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT alanjpaton museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT maximsnuraliev museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT feizhao museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT bryantdrew museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT yasamansalmaki museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT orzimattturginov museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT miaosun museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT alexandernsennikov museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT xiangqinyu museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT boli museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium AT chunleixiang museomicsinlamiaceaeresolvingthetaxonomicmysteryofpseudomarrubium |