Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
Calophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inve...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1710608 |
| _version_ | 1827773132195233792 |
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| author | Bin Guo Zhi-Li Zheng Kai Gao Jia-Lin Ma Jian-Yi Wang Fei Yang Xin-Min An |
| author_facet | Bin Guo Zhi-Li Zheng Kai Gao Jia-Lin Ma Jian-Yi Wang Fei Yang Xin-Min An |
| author_sort | Bin Guo |
| collection | DOAJ |
| description | Calophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inverted repeat (IR) region. The GC content of the whole chloroplast genome is 34.51%. The chloroplast genome comprises 112 unique genes, including 77 protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and 5 ribosomal RNA (rRNA) genes. Phylogenetic analyses of chloroplast genomes derived from 15 species indicated that C. sinica is close to Caragana and Tibetia species in Papilionoideae. |
| first_indexed | 2024-03-11T13:17:40Z |
| format | Article |
| id | doaj.art-8c0ed038cdc947b09f60e0d43a495629 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:40Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8c0ed038cdc947b09f60e0d43a4956292023-11-03T11:00:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015161461510.1080/23802359.2019.17106081710608Characterization of the complete chloroplast genome of Calophaca sinica Rehd.Bin Guo0Zhi-Li Zheng1Kai Gao2Jia-Lin Ma3Jian-Yi Wang4Fei Yang5Xin-Min An6National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityShanxi Academy of Forest SciencesNational Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityShanxi Academy of Forest SciencesShanxi Academy of Forest SciencesShanxi Academy of Forest SciencesNational Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityCalophaca sinica Rehd. is a tree species with high economic value, whose resource has been declining due to unreasonable exploitation. In this study, we sequenced, assembled, and annotated the complete chloroplast genome of C. sinica. The whole chloroplast genome size is 129,345 bp, it lacks an inverted repeat (IR) region. The GC content of the whole chloroplast genome is 34.51%. The chloroplast genome comprises 112 unique genes, including 77 protein-coding genes (PCGs), 30 transfer RNA (tRNA) genes, and 5 ribosomal RNA (rRNA) genes. Phylogenetic analyses of chloroplast genomes derived from 15 species indicated that C. sinica is close to Caragana and Tibetia species in Papilionoideae.http://dx.doi.org/10.1080/23802359.2019.1710608calophaca sinicachloroplast genomephylogenetic analysis |
| spellingShingle | Bin Guo Zhi-Li Zheng Kai Gao Jia-Lin Ma Jian-Yi Wang Fei Yang Xin-Min An Characterization of the complete chloroplast genome of Calophaca sinica Rehd. Mitochondrial DNA. Part B. Resources calophaca sinica chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Calophaca sinica Rehd. |
| title_full | Characterization of the complete chloroplast genome of Calophaca sinica Rehd. |
| title_fullStr | Characterization of the complete chloroplast genome of Calophaca sinica Rehd. |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Calophaca sinica Rehd. |
| title_short | Characterization of the complete chloroplast genome of Calophaca sinica Rehd. |
| title_sort | characterization of the complete chloroplast genome of calophaca sinica rehd |
| topic | calophaca sinica chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1710608 |
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