Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China
The complete mitogenome sequence of the Siberian large-toothed shrew (Sorex daphaenodon) was determined using long PCR. The genome was 17,407 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 23 transfer RNA genes, 1 origin of L strand replication, and 1 control region. The...
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-01-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1553517 |
| _version_ | 1797640545192902656 |
|---|---|
| author | Liu Zhu Qin Ke Song Li Jiao Jiao Dong Ming |
| author_facet | Liu Zhu Qin Ke Song Li Jiao Jiao Dong Ming |
| author_sort | Liu Zhu |
| collection | DOAJ |
| description | The complete mitogenome sequence of the Siberian large-toothed shrew (Sorex daphaenodon) was determined using long PCR. The genome was 17,407 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 23 transfer RNA genes, 1 origin of L strand replication, and 1 control region. The overall base composition of the heavy strand is A (33.1%), C (24.7%), T (29.0%), and G (13.2%). The base compositions present clearly the A–T skew, which is most obvious in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain, and the conserved sequence block domain are defined in the mitochondrial genome control region of the Siberian large-toothed shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The 11 Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations. |
| first_indexed | 2024-03-11T13:32:35Z |
| format | Article |
| id | doaj.art-8c190486f2ff47b4afbfd632ae287e19 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:35Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8c190486f2ff47b4afbfd632ae287e192023-11-02T16:07:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014154254410.1080/23802359.2018.15535171553517Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from ChinaLiu Zhu0Qin Ke Song1Li Jiao Jiao2Dong Ming3Mudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityThe complete mitogenome sequence of the Siberian large-toothed shrew (Sorex daphaenodon) was determined using long PCR. The genome was 17,407 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 23 transfer RNA genes, 1 origin of L strand replication, and 1 control region. The overall base composition of the heavy strand is A (33.1%), C (24.7%), T (29.0%), and G (13.2%). The base compositions present clearly the A–T skew, which is most obvious in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain, and the conserved sequence block domain are defined in the mitochondrial genome control region of the Siberian large-toothed shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The 11 Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations.http://dx.doi.org/10.1080/23802359.2018.1553517control regionmitogenomephylogenetic treesthe siberian large-toothed shrew |
| spellingShingle | Liu Zhu Qin Ke Song Li Jiao Jiao Dong Ming Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China Mitochondrial DNA. Part B. Resources control region mitogenome phylogenetic trees the siberian large-toothed shrew |
| title | Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China |
| title_full | Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China |
| title_fullStr | Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China |
| title_full_unstemmed | Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China |
| title_short | Sequencing and analysis of the complete mitochondrial genome of the Siberian large-toothed shrew (Sorex daphaenodon) from China |
| title_sort | sequencing and analysis of the complete mitochondrial genome of the siberian large toothed shrew sorex daphaenodon from china |
| topic | control region mitogenome phylogenetic trees the siberian large-toothed shrew |
| url | http://dx.doi.org/10.1080/23802359.2018.1553517 |
| work_keys_str_mv | AT liuzhu sequencingandanalysisofthecompletemitochondrialgenomeofthesiberianlargetoothedshrewsorexdaphaenodonfromchina AT qinkesong sequencingandanalysisofthecompletemitochondrialgenomeofthesiberianlargetoothedshrewsorexdaphaenodonfromchina AT lijiaojiao sequencingandanalysisofthecompletemitochondrialgenomeofthesiberianlargetoothedshrewsorexdaphaenodonfromchina AT dongming sequencingandanalysisofthecompletemitochondrialgenomeofthesiberianlargetoothedshrewsorexdaphaenodonfromchina |