ProtCID: a data resource for structural information on protein interactions
The authors previously developed the Protein Common Interface Database (ProtCID), which compares and clusters the interfaces of pairs of full-length protein chains with defined Pfam domain architectures in different PDB entries to identify biological assemblies. Here the authors extend ProtCID to th...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2020-02-01
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| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-020-14301-4 |
| _version_ | 1818992397581811712 |
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| author | Qifang Xu Roland L. Dunbrack |
| author_facet | Qifang Xu Roland L. Dunbrack |
| author_sort | Qifang Xu |
| collection | DOAJ |
| description | The authors previously developed the Protein Common Interface Database (ProtCID), which compares and clusters the interfaces of pairs of full-length protein chains with defined Pfam domain architectures in different PDB entries to identify biological assemblies. Here the authors extend ProtCID to the clustering of domain-domain interactions that also allows analyzing domain interactions with peptides, nucleic acids, and ligands. |
| first_indexed | 2024-12-20T20:25:31Z |
| format | Article |
| id | doaj.art-8d7404b0d08849d28b4e85321f97f6ba |
| institution | Directory Open Access Journal |
| issn | 2041-1723 |
| language | English |
| last_indexed | 2024-12-20T20:25:31Z |
| publishDate | 2020-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Nature Communications |
| spelling | doaj.art-8d7404b0d08849d28b4e85321f97f6ba2022-12-21T19:27:29ZengNature PortfolioNature Communications2041-17232020-02-0111111610.1038/s41467-020-14301-4ProtCID: a data resource for structural information on protein interactionsQifang Xu0Roland L. Dunbrack1Fox Chase Cancer CenterFox Chase Cancer CenterThe authors previously developed the Protein Common Interface Database (ProtCID), which compares and clusters the interfaces of pairs of full-length protein chains with defined Pfam domain architectures in different PDB entries to identify biological assemblies. Here the authors extend ProtCID to the clustering of domain-domain interactions that also allows analyzing domain interactions with peptides, nucleic acids, and ligands.https://doi.org/10.1038/s41467-020-14301-4 |
| spellingShingle | Qifang Xu Roland L. Dunbrack ProtCID: a data resource for structural information on protein interactions Nature Communications |
| title | ProtCID: a data resource for structural information on protein interactions |
| title_full | ProtCID: a data resource for structural information on protein interactions |
| title_fullStr | ProtCID: a data resource for structural information on protein interactions |
| title_full_unstemmed | ProtCID: a data resource for structural information on protein interactions |
| title_short | ProtCID: a data resource for structural information on protein interactions |
| title_sort | protcid a data resource for structural information on protein interactions |
| url | https://doi.org/10.1038/s41467-020-14301-4 |
| work_keys_str_mv | AT qifangxu protcidadataresourceforstructuralinformationonproteininteractions AT rolandldunbrack protcidadataresourceforstructuralinformationonproteininteractions |