Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

<p>Abstract</p> <p>Background</p> <p>Evolutionary conservation has been used successfully to help identify cis-acting DNA regions that are important in regulating tissue-specific gene expression. Motivated by increasing evidence that some DNA regulatory regions are not...

Bibliografiset tiedot
Päätekijät:	Zack Donald J, Lin Jimmy, Yu Xueping, Qian Jiang
Aineistotyyppi:	Artikkeli
Kieli:	English
Julkaistu:	BMC 2007-11-01
Sarja:	BMC Bioinformatics
Linkit:	http://www.biomedcentral.com/1471-2105/8/437

Samankaltaisia teoksia

Intronic cis-regulatory modules mediate tissue-specific and microbial control of angptl4/fiaf transcription.
Tekijä: J Gray Camp, et al.
Julkaistu: (2012-01-01)

Studying the functional conservation of cis-regulatory modules and their transcriptional output
Tekijä: Bailey Timothy L, et al.
Julkaistu: (2008-04-01)

Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Tekijä: Chen Xiaoyu, et al.
Julkaistu: (2007-12-01)

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models.
Tekijä: Dmitry Svetlichnyy, et al.
Julkaistu: (2015-11-01)

ModuleFinder : a computational model for the identification of Cis regulatory modules
Tekijä: He, Fangxue
Julkaistu: (2006)

Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs
Tekijä: Girgis Hani Z, et al.
Julkaistu: (2012-02-01)

Distance and helical phase dependence of synergistic transcription activation in cis-regulatory module.
Tekijä: Qilai Huang, et al.
Julkaistu: (2012-01-01)

Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
Tekijä: Vasavi Sundaram, et al.
Julkaistu: (2017-03-01)

Systematic identification of functional modules and cis-regulatory elements in <it>Arabidopsis thaliana</it>
Tekijä: Ruan Jianhua, et al.
Julkaistu: (2011-11-01)

Statistical significance of cis-regulatory modules
Tekijä: Smith Andrew D, et al.
Julkaistu: (2007-01-01)

TiGER: A database for tissue-specific gene expression and regulation
Tekijä: Zack Donald J, et al.
Julkaistu: (2008-06-01)

The cis-regulatory logic of the mammalian photoreceptor transcriptional network.
Tekijä: Timothy H-C Hsiau, et al.
Julkaistu: (2007-07-01)

Functional evolution of a cis-regulatory module.
Tekijä: Michael Z Ludwig, et al.
Julkaistu: (2005-04-01)

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma
Tekijä: Gutmann David H, et al.
Julkaistu: (2011-07-01)

Comprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific <it>cis</it>-regulatory modules
Tekijä: Kang Keunsoo, et al.
Julkaistu: (2013-01-01)

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules.
Tekijä: Todd P Michael, et al.
Julkaistu: (2008-02-01)

The identification of cis-regulatory elements of runx3
Tekijä: Nah, Giselle Sek Suan
Julkaistu: (2013)

The role of cis-regulatory elements in Plasmodium falciparum transcriptional regulation
Tekijä: Lim, Eng How
Julkaistu: (2015)

Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules.
Tekijä: Dimitri Bieli, et al.
Julkaistu: (2015-10-01)

A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome
Tekijä: Pengyu Ni, et al.
Julkaistu: (2022-10-01)

Erroneous attribution of relevant transcription factor binding sites despite successful prediction of <it>cis</it>-regulatory modules
Tekijä: Halfon Marc S, et al.
Julkaistu: (2011-11-01)

Systematic identification of post-transcriptional regulatory modules
Tekijä: Khoroshkin, M, et al.
Julkaistu: (2024)

Systematic identification of post-transcriptional regulatory modules
Tekijä: Matvei Khoroshkin, et al.
Julkaistu: (2024-09-01)

Assessing computational methods of cis-regulatory module prediction.
Tekijä: Jing Su, et al.
Julkaistu: (2010-12-01)

SMCis: An Effective Algorithm for Discovery of Cis-Regulatory Modules.
Tekijä: Haitao Guo, et al.
Julkaistu: (2016-01-01)

The cis-regulatory effects of modern human-specific variants
Tekijä: Carly V Weiss, et al.
Julkaistu: (2021-04-01)

Allele-specific expression elucidates cis-regulatory logic.
Tekijä: Sofie Y N Delbare, et al.
Julkaistu: (2018-11-01)

In vivo Hox binding specificity revealed by systematic changes to a single cis regulatory module
Tekijä: Carlos Sánchez-Higueras, et al.
Julkaistu: (2019-08-01)

ModuleDigger: an itemset mining framework for the detection of <it>cis</it>-regulatory modules
Tekijä: Verstuyf Annemieke, et al.
Julkaistu: (2009-01-01)

Identification, Design, and Application of Noncoding Cis-Regulatory Elements
Tekijä: Lingna Xu, et al.
Julkaistu: (2024-08-01)

Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq
Tekijä: Ruitu Lyu, et al.
Julkaistu: (2024-08-01)

Identification of gene co-regulatory modules and associated <it>cis-</it>elements involved in degenerative heart disease
Tekijä: Danko Charles G, et al.
Julkaistu: (2009-05-01)

Deciphering cis/trans RNA regulatory interactions in vivo
Tekijä: Steinkraus, BR
Julkaistu: (2016)

Identification of the global diurnal rhythmic transcripts, transcription factors and time-of-day specific cis elements in Chenopodium quinoa
Tekijä: Qi Wu, et al.
Julkaistu: (2023-02-01)

Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice.
Tekijä: Sylvia M Durkin, et al.
Julkaistu: (2024-02-01)

Genome-wide computational identification of biologically significant cis-regulatory elements and associated transcription factors from rice
Tekijä: Ho, Chai Ling, et al.
Julkaistu: (2019)

SCRMshaw: Supervised cis-regulatory module prediction for insect genomes.
Tekijä: Hasiba Asma, et al.
Julkaistu: (2024-01-01)

A specialized learner for inferring structured cis-regulatory modules
Tekijä: Noto Keith, et al.
Julkaistu: (2006-12-01)

An integrated approach to identifying cis-regulatory modules in the human genome.
Tekijä: Kyoung-Jae Won, et al.
Julkaistu: (2009-01-01)

Functional Evolution of a <italic>cis-</italic>Regulatory Module
Tekijä: Ludwig Michael Z, et al.
Julkaistu: (2005-01-01)