Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

<p>Abstract</p> <p>Background</p> <p>Evolutionary conservation has been used successfully to help identify cis-acting DNA regions that are important in regulating tissue-specific gene expression. Motivated by increasing evidence that some DNA regulatory regions are not...

Бүрэн тодорхойлолт

Номзүйн дэлгэрэнгүй
Үндсэн зохиолчид:	Zack Donald J, Lin Jimmy, Yu Xueping, Qian Jiang
Формат:	Өгүүллэг
Хэл сонгох:	English
Хэвлэсэн:	BMC 2007-11-01
Цуврал:	BMC Bioinformatics
Онлайн хандалт:	http://www.biomedcentral.com/1471-2105/8/437

Ижил төстэй зүйлс

Intronic cis-regulatory modules mediate tissue-specific and microbial control of angptl4/fiaf transcription.
-н: J Gray Camp, зэрэг
Хэвлэсэн: (2012-01-01)

Studying the functional conservation of cis-regulatory modules and their transcriptional output
-н: Bailey Timothy L, зэрэг
Хэвлэсэн: (2008-04-01)

Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
-н: Chen Xiaoyu, зэрэг
Хэвлэсэн: (2007-12-01)

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models.
-н: Dmitry Svetlichnyy, зэрэг
Хэвлэсэн: (2015-11-01)

ModuleFinder : a computational model for the identification of Cis regulatory modules
-н: He, Fangxue
Хэвлэсэн: (2006)

Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs
-н: Girgis Hani Z, зэрэг
Хэвлэсэн: (2012-02-01)

Distance and helical phase dependence of synergistic transcription activation in cis-regulatory module.
-н: Qilai Huang, зэрэг
Хэвлэсэн: (2012-01-01)

Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
-н: Vasavi Sundaram, зэрэг
Хэвлэсэн: (2017-03-01)

Systematic identification of functional modules and cis-regulatory elements in <it>Arabidopsis thaliana</it>
-н: Ruan Jianhua, зэрэг
Хэвлэсэн: (2011-11-01)

Statistical significance of cis-regulatory modules
-н: Smith Andrew D, зэрэг
Хэвлэсэн: (2007-01-01)

TiGER: A database for tissue-specific gene expression and regulation
-н: Zack Donald J, зэрэг
Хэвлэсэн: (2008-06-01)

The cis-regulatory logic of the mammalian photoreceptor transcriptional network.
-н: Timothy H-C Hsiau, зэрэг
Хэвлэсэн: (2007-07-01)

Functional evolution of a cis-regulatory module.
-н: Michael Z Ludwig, зэрэг
Хэвлэсэн: (2005-04-01)

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma
-н: Gutmann David H, зэрэг
Хэвлэсэн: (2011-07-01)

Comprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific <it>cis</it>-regulatory modules
-н: Kang Keunsoo, зэрэг
Хэвлэсэн: (2013-01-01)

Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules.
-н: Todd P Michael, зэрэг
Хэвлэсэн: (2008-02-01)

The identification of cis-regulatory elements of runx3
-н: Nah, Giselle Sek Suan
Хэвлэсэн: (2013)

The role of cis-regulatory elements in Plasmodium falciparum transcriptional regulation
-н: Lim, Eng How
Хэвлэсэн: (2015)

Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules.
-н: Dimitri Bieli, зэрэг
Хэвлэсэн: (2015-10-01)

A map of cis-regulatory modules and constituent transcription factor binding sites in 80% of the mouse genome
-н: Pengyu Ni, зэрэг
Хэвлэсэн: (2022-10-01)

Erroneous attribution of relevant transcription factor binding sites despite successful prediction of <it>cis</it>-regulatory modules
-н: Halfon Marc S, зэрэг
Хэвлэсэн: (2011-11-01)

Systematic identification of post-transcriptional regulatory modules
-н: Khoroshkin, M, зэрэг
Хэвлэсэн: (2024)

Systematic identification of post-transcriptional regulatory modules
-н: Matvei Khoroshkin, зэрэг
Хэвлэсэн: (2024-09-01)

Assessing computational methods of cis-regulatory module prediction.
-н: Jing Su, зэрэг
Хэвлэсэн: (2010-12-01)

SMCis: An Effective Algorithm for Discovery of Cis-Regulatory Modules.
-н: Haitao Guo, зэрэг
Хэвлэсэн: (2016-01-01)

The cis-regulatory effects of modern human-specific variants
-н: Carly V Weiss, зэрэг
Хэвлэсэн: (2021-04-01)

Allele-specific expression elucidates cis-regulatory logic.
-н: Sofie Y N Delbare, зэрэг
Хэвлэсэн: (2018-11-01)

In vivo Hox binding specificity revealed by systematic changes to a single cis regulatory module
-н: Carlos Sánchez-Higueras, зэрэг
Хэвлэсэн: (2019-08-01)

ModuleDigger: an itemset mining framework for the detection of <it>cis</it>-regulatory modules
-н: Verstuyf Annemieke, зэрэг
Хэвлэсэн: (2009-01-01)

Identification, Design, and Application of Noncoding Cis-Regulatory Elements
-н: Lingna Xu, зэрэг
Хэвлэсэн: (2024-08-01)

Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq
-н: Ruitu Lyu, зэрэг
Хэвлэсэн: (2024-08-01)

Identification of gene co-regulatory modules and associated <it>cis-</it>elements involved in degenerative heart disease
-н: Danko Charles G, зэрэг
Хэвлэсэн: (2009-05-01)

Deciphering cis/trans RNA regulatory interactions in vivo
-н: Steinkraus, BR
Хэвлэсэн: (2016)

Identification of the global diurnal rhythmic transcripts, transcription factors and time-of-day specific cis elements in Chenopodium quinoa
-н: Qi Wu, зэрэг
Хэвлэсэн: (2023-02-01)

Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice.
-н: Sylvia M Durkin, зэрэг
Хэвлэсэн: (2024-02-01)

Genome-wide computational identification of biologically significant cis-regulatory elements and associated transcription factors from rice
-н: Ho, Chai Ling, зэрэг
Хэвлэсэн: (2019)

SCRMshaw: Supervised cis-regulatory module prediction for insect genomes.
-н: Hasiba Asma, зэрэг
Хэвлэсэн: (2024-01-01)

A specialized learner for inferring structured cis-regulatory modules
-н: Noto Keith, зэрэг
Хэвлэсэн: (2006-12-01)

An integrated approach to identifying cis-regulatory modules in the human genome.
-н: Kyoung-Jae Won, зэрэг
Хэвлэсэн: (2009-01-01)

Functional Evolution of a <italic>cis-</italic>Regulatory Module
-н: Ludwig Michael Z, зэрэг
Хэвлэсэн: (2005-01-01)