The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system
The objective of this research was to analyze the interaction of the active ingredients in Labisia pumila (kaempferol, rutin, apigenin, caffeic acid, pyrogallol and gallic acid) against RANK–RANKL–OPG system in context of osteoporosis. This is an in silico research. The three-dimensional structure i...
| Main Authors: | , , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2018-02-01
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| Series: | Clinical Nutrition Experimental |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352939317300222 |
| _version_ | 1828166654017667072 |
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| author | Zairin Noor Nia Kania Azharuddin Azharuddin Nicolaas Budhiparama Nurdiana Nurdiana Nucky Nursjamsi Hidajat Fatmawati Fatmawati Bambang Setiawan |
| author_facet | Zairin Noor Nia Kania Azharuddin Azharuddin Nicolaas Budhiparama Nurdiana Nurdiana Nucky Nursjamsi Hidajat Fatmawati Fatmawati Bambang Setiawan |
| author_sort | Zairin Noor |
| collection | DOAJ |
| description | The objective of this research was to analyze the interaction of the active ingredients in Labisia pumila (kaempferol, rutin, apigenin, caffeic acid, pyrogallol and gallic acid) against RANK–RANKL–OPG system in context of osteoporosis. This is an in silico research. The three-dimensional structure in .sdf file is converted to PDB format using the Open Babel 2.3.1 software. The three-dimensional structure model of RCSB RANK–RANKL and RANKL–OPG was obtained from http://www.rcsb.org/pdb. The ligand–protein docking and visualization analysis was carried out with Hex8.0 and Discovery Studio Client 3.5 software. RANK–RANKL or RANKL–OPG complex has the easiest interaction with rutin. In conclusion, flavonoid compounds (rutin, apigenin, kaempferol) more easily interact with RANK–RANKL and RANKL–OPG systems than isofavonoid groups (caffeic acid, pyrogallol, gallic acid). This opens the opportunity for the utilization of flavonoid from L. pumila as antiosteoporosis. |
| first_indexed | 2024-04-12T02:04:36Z |
| format | Article |
| id | doaj.art-8ec49be1411f4783800caae1c95259c5 |
| institution | Directory Open Access Journal |
| issn | 2352-9393 |
| language | English |
| last_indexed | 2024-04-12T02:04:36Z |
| publishDate | 2018-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Clinical Nutrition Experimental |
| spelling | doaj.art-8ec49be1411f4783800caae1c95259c52022-12-22T03:52:35ZengElsevierClinical Nutrition Experimental2352-93932018-02-0117C232710.1016/j.yclnex.2017.09.001The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG systemZairin Noor0Nia Kania1Azharuddin Azharuddin2Nicolaas Budhiparama3Nurdiana Nurdiana4Nucky Nursjamsi Hidajat5Fatmawati Fatmawati6Bambang Setiawan7Research Center for Osteoporosis, Department of Orthopaedics and Traumatology, Ulin General Hospital, Medical Faculty, Lambung Mangkurat University, Banjarmasin, South Kalimantan, IndonesiaResearch Center for Toxicology, Cancer, and Regenerative Medicine, Department of Pathology, Ulin General Hospital, Medical Faculty Lambung Mangkurat University, Banjarmasin, South Kalimantan, IndonesiaDepartment of Orthopaedics and Traumatology, Zainoel Abidin General Hospital, Medical Faculty Syiah Kuala University, Banda Aceh, IndonesiaBudhiparama Institute of Hip and Knee Research and Education Foundation for Arthroplasty, Sports Medicine and Osteoporosis, Jakarta, IndonesiaPharmacology Laboratory, Medical Faculty Brawijaya University, Malang, East Java, IndonesiaDepartment of Orthopaedics and Traumatology, Hasan Sadiki General Hospital, Medical Faculty Padjdjaran University, Bandung, West of Java, IndonesiaMidwifery Master Study Programme, Faculty of Medicine Brawijaya University, Malang, East Java, IndonesiaResearch Center for Osteoporosis, Department of Medical Chemistry and Biochemistry, Medical Faculty Lambung Mangkurat University, Banjarmasin, South Kalimantan, IndonesiaThe objective of this research was to analyze the interaction of the active ingredients in Labisia pumila (kaempferol, rutin, apigenin, caffeic acid, pyrogallol and gallic acid) against RANK–RANKL–OPG system in context of osteoporosis. This is an in silico research. The three-dimensional structure in .sdf file is converted to PDB format using the Open Babel 2.3.1 software. The three-dimensional structure model of RCSB RANK–RANKL and RANKL–OPG was obtained from http://www.rcsb.org/pdb. The ligand–protein docking and visualization analysis was carried out with Hex8.0 and Discovery Studio Client 3.5 software. RANK–RANKL or RANKL–OPG complex has the easiest interaction with rutin. In conclusion, flavonoid compounds (rutin, apigenin, kaempferol) more easily interact with RANK–RANKL and RANKL–OPG systems than isofavonoid groups (caffeic acid, pyrogallol, gallic acid). This opens the opportunity for the utilization of flavonoid from L. pumila as antiosteoporosis.http://www.sciencedirect.com/science/article/pii/S2352939317300222OsteoporosisBoneHerbalFatimah grassRemodeling |
| spellingShingle | Zairin Noor Nia Kania Azharuddin Azharuddin Nicolaas Budhiparama Nurdiana Nurdiana Nucky Nursjamsi Hidajat Fatmawati Fatmawati Bambang Setiawan The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system Clinical Nutrition Experimental Osteoporosis Bone Herbal Fatimah grass Remodeling |
| title | The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system |
| title_full | The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system |
| title_fullStr | The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system |
| title_full_unstemmed | The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system |
| title_short | The interaction of the active compounds of Labisia pumila on RANK–RANKL–OPG system |
| title_sort | interaction of the active compounds of labisia pumila on rank rankl opg system |
| topic | Osteoporosis Bone Herbal Fatimah grass Remodeling |
| url | http://www.sciencedirect.com/science/article/pii/S2352939317300222 |
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