Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess

With the widespread application of recombinant DNA technology, many useful substances are produced by bioprocesses. For the monitoring of the recombinant protein production process, most of the existing technologies are those for the culture environment (pH, O<sub>2</sub>, etc.). However...

Full description

Bibliographic Details
Main Authors: Xuerao Ning, Takanobu Yasuda, Tetsuya Kitaguchi, Hiroshi Ueda
Format: Article
Language:English
Published: MDPI AG 2021-07-01
Series:Sensors
Subjects:
Online Access:https://www.mdpi.com/1424-8220/21/15/4993
_version_ 1797525194803249152
author Xuerao Ning
Takanobu Yasuda
Tetsuya Kitaguchi
Hiroshi Ueda
author_facet Xuerao Ning
Takanobu Yasuda
Tetsuya Kitaguchi
Hiroshi Ueda
author_sort Xuerao Ning
collection DOAJ
description With the widespread application of recombinant DNA technology, many useful substances are produced by bioprocesses. For the monitoring of the recombinant protein production process, most of the existing technologies are those for the culture environment (pH, O<sub>2</sub>, etc.). However, the production status of the target protein can only be known after the subsequent separation and purification process. To speed up the monitoring of the production process and screening of the higher-yield target protein variants, here we developed an antibody-based His-tag sensor Quenchbody (Q-body), which can quickly detect the C-terminally His-tagged recombinant protein produced in the culture medium. Compared with single-chain Fv-based Q-body having one dye, the Fab-based Q-body having two dyes showed a higher response. In addition, not only was fluorescence response improved but also detection sensitivity by the mutations of tyrosine to tryptophan in the heavy chain CDR region. Moreover, the effect of the mutations on antigen-binding was successfully validated by molecular docking simulation by CDOCKER. Finally, the constructed Q-body was successfully applied to monitor the amount of anti-SARS CoV-2 nanobody secreted into the <i>Brevibacillus</i> culture media.
first_indexed 2024-03-10T09:09:18Z
format Article
id doaj.art-8f3ae14a6357453f874471a60773da0e
institution Directory Open Access Journal
issn 1424-8220
language English
last_indexed 2024-03-10T09:09:18Z
publishDate 2021-07-01
publisher MDPI AG
record_format Article
series Sensors
spelling doaj.art-8f3ae14a6357453f874471a60773da0e2023-11-22T06:08:52ZengMDPI AGSensors1424-82202021-07-012115499310.3390/s21154993Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in BioprocessXuerao Ning0Takanobu Yasuda1Tetsuya Kitaguchi2Hiroshi Ueda3Tokyo Institute of Technology, Graduate School of Life Science and Technology, 4259-R1-18 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Kanagawa, JapanTokyo Institute of Technology, Graduate School of Life Science and Technology, 4259-R1-18 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Kanagawa, JapanLaboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259-R1-18 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Kanagawa, JapanLaboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259-R1-18 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Kanagawa, JapanWith the widespread application of recombinant DNA technology, many useful substances are produced by bioprocesses. For the monitoring of the recombinant protein production process, most of the existing technologies are those for the culture environment (pH, O<sub>2</sub>, etc.). However, the production status of the target protein can only be known after the subsequent separation and purification process. To speed up the monitoring of the production process and screening of the higher-yield target protein variants, here we developed an antibody-based His-tag sensor Quenchbody (Q-body), which can quickly detect the C-terminally His-tagged recombinant protein produced in the culture medium. Compared with single-chain Fv-based Q-body having one dye, the Fab-based Q-body having two dyes showed a higher response. In addition, not only was fluorescence response improved but also detection sensitivity by the mutations of tyrosine to tryptophan in the heavy chain CDR region. Moreover, the effect of the mutations on antigen-binding was successfully validated by molecular docking simulation by CDOCKER. Finally, the constructed Q-body was successfully applied to monitor the amount of anti-SARS CoV-2 nanobody secreted into the <i>Brevibacillus</i> culture media.https://www.mdpi.com/1424-8220/21/15/4993His-tagfluorescent biosensorimmunoassayrecombinant protein production
spellingShingle Xuerao Ning
Takanobu Yasuda
Tetsuya Kitaguchi
Hiroshi Ueda
Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
Sensors
His-tag
fluorescent biosensor
immunoassay
recombinant protein production
title Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
title_full Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
title_fullStr Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
title_full_unstemmed Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
title_short Construction of Fluorescent Immunosensor Quenchbody to Detect His-Tagged Recombinant Proteins Produced in Bioprocess
title_sort construction of fluorescent immunosensor quenchbody to detect his tagged recombinant proteins produced in bioprocess
topic His-tag
fluorescent biosensor
immunoassay
recombinant protein production
url https://www.mdpi.com/1424-8220/21/15/4993
work_keys_str_mv AT xueraoning constructionoffluorescentimmunosensorquenchbodytodetecthistaggedrecombinantproteinsproducedinbioprocess
AT takanobuyasuda constructionoffluorescentimmunosensorquenchbodytodetecthistaggedrecombinantproteinsproducedinbioprocess
AT tetsuyakitaguchi constructionoffluorescentimmunosensorquenchbodytodetecthistaggedrecombinantproteinsproducedinbioprocess
AT hiroshiueda constructionoffluorescentimmunosensorquenchbodytodetecthistaggedrecombinantproteinsproducedinbioprocess