Short genome report of cellulose-producing commensal Escherichia coli 1094
Abstract Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extr...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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BMC
2018-05-01
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| Series: | Standards in Genomic Sciences |
| Subjects: | |
| Online Access: | http://link.springer.com/article/10.1186/s40793-018-0316-0 |
| _version_ | 1818880729989251072 |
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| author | Joaquin Bernal-Bayard Laura Gomez-Valero Aimee Wessel Varun Khanna Christiane Bouchier Jean-Marc Ghigo |
| author_facet | Joaquin Bernal-Bayard Laura Gomez-Valero Aimee Wessel Varun Khanna Christiane Bouchier Jean-Marc Ghigo |
| author_sort | Joaquin Bernal-Bayard |
| collection | DOAJ |
| description | Abstract Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain E. coli 1094 and compare it with five other closely related genomes within E. coli phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several E. coli strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000. |
| first_indexed | 2024-12-19T14:50:36Z |
| format | Article |
| id | doaj.art-8f65319d6df54ab7ab3b8214d90abc71 |
| institution | Directory Open Access Journal |
| issn | 1944-3277 |
| language | English |
| last_indexed | 2024-12-19T14:50:36Z |
| publishDate | 2018-05-01 |
| publisher | BMC |
| record_format | Article |
| series | Standards in Genomic Sciences |
| spelling | doaj.art-8f65319d6df54ab7ab3b8214d90abc712022-12-21T20:16:51ZengBMCStandards in Genomic Sciences1944-32772018-05-0113111010.1186/s40793-018-0316-0Short genome report of cellulose-producing commensal Escherichia coli 1094Joaquin Bernal-Bayard0Laura Gomez-Valero1Aimee Wessel2Varun Khanna3Christiane Bouchier4Jean-Marc Ghigo5Département de Microbiologie, Unité de Génétique des Biofilms, Institut PasteurDépartement de Génomes et Génétique, Unité de Biologie des Bactéries Intracellulaires, Institut PasteurDépartement de Microbiologie, Unité de Génétique des Biofilms, Institut PasteurInstitut Pasteur – Hub Bioinformatique et Biostatistique – C3BI, USR 3756 IP CNRSInstitut Pasteur, Plate-forme Génomique, Pôle BiomicsDépartement de Microbiologie, Unité de Génétique des Biofilms, Institut PasteurAbstract Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain E. coli 1094 and compare it with five other closely related genomes within E. coli phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several E. coli strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000.http://link.springer.com/article/10.1186/s40793-018-0316-0E. coliCommensalBiofilmCelluloseExtracellular matrixBcs operon |
| spellingShingle | Joaquin Bernal-Bayard Laura Gomez-Valero Aimee Wessel Varun Khanna Christiane Bouchier Jean-Marc Ghigo Short genome report of cellulose-producing commensal Escherichia coli 1094 Standards in Genomic Sciences E. coli Commensal Biofilm Cellulose Extracellular matrix Bcs operon |
| title | Short genome report of cellulose-producing commensal Escherichia coli 1094 |
| title_full | Short genome report of cellulose-producing commensal Escherichia coli 1094 |
| title_fullStr | Short genome report of cellulose-producing commensal Escherichia coli 1094 |
| title_full_unstemmed | Short genome report of cellulose-producing commensal Escherichia coli 1094 |
| title_short | Short genome report of cellulose-producing commensal Escherichia coli 1094 |
| title_sort | short genome report of cellulose producing commensal escherichia coli 1094 |
| topic | E. coli Commensal Biofilm Cellulose Extracellular matrix Bcs operon |
| url | http://link.springer.com/article/10.1186/s40793-018-0316-0 |
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