De Novo Assembly of Transcriptome and Development of Novel EST-SSR Markers in Rhododendron rex Lévl. through Illumina Sequencing

De Novo Assembly of Transcriptome and Development of Novel EST-SSR Markers in Rhododendron rex Lévl. through Illumina Sequencing

Transcriptome sequences generated by next-generation sequencing (NGS) technologies can be utilized to rapidly detect and characterize a large number of gene-based microsatellites from different plants. Rhododendron rex Lévl. is a perennial woody species from the family Ericaceae and an endangered pl...

Full description

Bibliographic Details
Main Authors:	Yue Zhang, Xue Zhang, Yue-Hua Wang, Shi-Kang Shen
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2017-09-01
Series:	Frontiers in Plant Science
Subjects:	Rhododendron rex EST-SSRs transcriptome sequencing genomics evolutionary adaptation
Online Access:	http://journal.frontiersin.org/article/10.3389/fpls.2017.01664/full

Similar Items

Exploitation of <i>Malus</i> ESTs for development of SSR markers after <i>in silico</i> analysis
by: Era Vaidya, et al.
Published: (2015-08-01)

Transcriptome analysis of colored calla lily (Zantedeschia rehmannii Engl.) by Illumina sequencing: de novo assembly, annotation and EST-SSR marker development
by: Zunzheng Wei, et al.
Published: (2016-09-01)

De novo assembly and Transcriptome characterization of an endemic species of Vietnam, Panax vietnamensis Ha et Grushv., including the development of EST-SSR markers for population genetics
by: Dinh Duy Vu, et al.
Published: (2020-07-01)

Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers
by: N. Sathyanarayana, et al.
Published: (2017-05-01)

Application of EST-SSR markers developed from the transcriptome of Torreya grandis (Taxaceae), a threatened nut-yielding conifer tree
by: Jun Zeng, et al.
Published: (2018-09-01)

Characterization of the transcriptome and EST-SSR development in Boea clarkeana, a desiccation-tolerant plant endemic to China
by: Ying Wang, et al.
Published: (2017-06-01)

Genetic Divergence and Relationship Among Opisthopappus Species Identified by Development of EST-SSR Markers
by: Min Chai, et al.
Published: (2020-02-01)

Development of a panel of unigene-derived polymorphic EST–SSR markers in lentil using public database information
by: Debjyoti Sen Gupta, et al.
Published: (2016-10-01)

Characterization and Application of EST-SSR Markers Developed from Transcriptome Sequences in <i>Elymus breviaristatus</i> (Poaceae: Triticeae)
by: Jin Li, et al.
Published: (2023-01-01)

De novo transcriptome assembly using Illumina sequencing and development of EST-SSR markers in a monoecious herb Sagittaria trifolia Linn
by: Hanqing Tang, et al.
Published: (2022-10-01)

Desenvolvimento e mapeamento de microssatélites gênicos (EST-SSRs) de camu-camu (Myrciaria dubia [H.B.K.] McVaugh)
by: Salvador Rojas, et al.
Published: (2008-07-01)

Using Bioinformatics Tools for Identification and Characterization of Transcriptome Derived EST-SSRs in Silver Fir (Abies alba Mill.)
by: Dragos POSTOLACHE
Published: (2017-05-01)

The complete T rex /
by: 188739 Horner, John R., et al.
Published: (1993)

Discovery of EST-Derived Microsatellite Primers in the Legume <i>Lens culinaris</i> (Fabaceae)
by: Neelu Jain, et al.
Published: (2013-06-01)

Genetic Diversity and Population Structure of <i>Rhododendron rex</i> Subsp. <i>rex</i> Inferred from Microsatellite Markers and Chloroplast DNA Sequences
by: Xue Zhang, et al.
Published: (2020-03-01)

Genetic diversity of Rhododendron simsii Planch. natural populations at different altitudes in Wujiashan Mountain (central China)
by: Shuzhen Wang, et al.
Published: (2019-12-01)

EST-SSR marker development based on RNA-sequencing of E. sibiricus and its application for phylogenetic relationships analysis of seventeen Elymus species
by: Zongyu Zhang, et al.
Published: (2019-06-01)

De novo Assembly and Characterization of Patagonian Toothfish Transcriptome and Develop of EST-SSR Markers for Population Genetics
by: Jorge Touma, et al.
Published: (2019-11-01)

Study on phytochemical and pharmacological activities of four Rhododendron plants endemic to Northeast China
by: Jing-Yu Liu, et al.
Published: (2022-03-01)

De Novo Transcriptome Profiling for the Generation and Validation of Microsatellite Markers, Transcription Factors, and Database Development for <i>Andrographis paniculata</i>
by: Rakesh Singh, et al.
Published: (2023-05-01)

Characterization of Global Transcriptome Using Illumina Paired-End Sequencing and Development of EST-SSR Markers in Two Species of Gynostemma (Cucurbitaceae)
by: Yue-Mei Zhao, et al.
Published: (2015-11-01)

Develop a preliminary core germplasm with the novel polymorphism EST-SSRs derived from three transcriptomes of colored calla lily (Zantedeschia hybrida)
by: Yi Wang, et al.
Published: (2023-02-01)

Leaf morphological and genetic variation between Quercus rubra and Quercus ellipsoidalis: comparison of sympatric and parapatric populations
by: Oliver Gailing, et al.
Published: (2018-07-01)

Development and Characterization of Novel EST-SSRs from Larix gmelinii and Their Cross-Species Transferability
by: Guojun Zhang, et al.
Published: (2015-07-01)

Gene Co-expression Network and Regression Analysis Identify the Transcriptomic, Physiological, and Biochemical Indicators of the Response of Alpine Woody Plant Rhododendron rex to Drought Stress
by: Xiong-Li Zhou, et al.
Published: (2022-05-01)

FLORAE MALESIANAE PRECURSORES XXIII THE GENUS RHODODENDRON IN MALAYSIA
by: H. SLEUMER
Published: (1960-03-01)

De Novo Transcriptome Assembly and EST-SSR Marker Development and Application in <i>Chrysosplenium macrophyllum</i>
by: Niyan Xiang, et al.
Published: (2023-01-01)

De novo transcriptome assembly, gene annotation, and EST-SSR marker development of an important medicinal and edible crop, Amomum tsaoko (Zingiberaceae)
by: Mengli Ma, et al.
Published: (2022-09-01)

Selection Signatures Reveal Candidate Genes for the Cornish Rex Breed-Specific Phenotype
by: Minja Zorc, et al.
Published: (2024-03-01)

Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.)
by: Monica Harmon, et al.
Published: (2017-08-01)

De novo transcriptome sequencing of Rhododendron molle and identification of genes involved in the biosynthesis of secondary metabolites
by: Guo-Lin Zhou, et al.
Published: (2020-09-01)

An RNA Sequencing Transcriptome Analysis and Development of EST-SSR Markers in Chinese Hawthorn through Illumina Sequencing
by: Suliya Ma, et al.
Published: (2019-01-01)

Development and Characterization of Polymorphic Microsatellite Markers (SSRs) for an Endemic Plant, Pseudolarix amabilis (Nelson) Rehd. (Pinaceae)
by: Qi-Fang Geng, et al.
Published: (2015-02-01)

Integrative analysis of transcriptome and metabolome reveals flavonoid biosynthesis regulation in Rhododendron pulchrum petals
by: Xi Xia, et al.
Published: (2022-08-01)

The Rhododendron Plant Genome Database (RPGD): a comprehensive online omics database for Rhododendron
by: Ningyawen Liu, et al.
Published: (2021-05-01)

Diversity of fungi colonizing leaves of Rhododendron (Rhododendron L.) cuttings
by: Barbara Kierpiec-Baran, et al.
Published: (2014-04-01)

Identification and Characterization of Five Cold Stress-Related Rhododendron Dehydrin Genes: Spotlight on a FSK-Type Dehydrin With Multiple F-Segments
by: Hui Wei, et al.
Published: (2019-02-01)

Variation in gene expression along an elevation gradient of Rhododendron sanguineum var. haemaleum assessed in a comparative transcriptomic analysis
by: Lin-Jiang Ye, et al.
Published: (2023-03-01)

ANATOMICAL STRUCTURE AND ADVENTITIOUS ROOT FORMATION IN Rhododendron ponticum L. CUTTINGS
by: Katarzyna Strzelecka
Published: (2007-06-01)

Influence of Fertilization and Mycorrhizae on the Nutritional Status of Rhododendron (<i>Rhododendron hybridum</i>) in a Nursery
by: Zbigniew Jarosz, et al.
Published: (2021-06-01)