The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1698997 |
| _version_ | 1797639508015972352 |
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| author | Yuan Zheng Yana Luo Yunqing Li Yi Wang |
| author_facet | Yuan Zheng Yana Luo Yunqing Li Yi Wang |
| author_sort | Yuan Zheng |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp, which were separated by a pair of inverted repeats (IR) regions of 19,699 bp. The genome contains 126 genes, including 81 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 34.4%, and 44.4%, respectively. Further phylogenomic analysis showed that C. tonkinensis clustered in a clade in Lauraceae family. |
| first_indexed | 2024-03-11T13:18:44Z |
| format | Article |
| id | doaj.art-8fd994c5a9e74bdf97b09e0ea9373ba8 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:44Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8fd994c5a9e74bdf97b09e0ea9373ba82023-11-03T11:00:18ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015120420510.1080/23802359.2019.16989971698997The complete chloroplast genome sequence of Caryodaphnopsis tonkinensisYuan Zheng0Yana Luo1Yunqing Li2Yi Wang3Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryCollege of Forestry, Southwest Forestry UniversityLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of ForestryThe first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp, which were separated by a pair of inverted repeats (IR) regions of 19,699 bp. The genome contains 126 genes, including 81 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 34.4%, and 44.4%, respectively. Further phylogenomic analysis showed that C. tonkinensis clustered in a clade in Lauraceae family.http://dx.doi.org/10.1080/23802359.2019.1698997caryodaphnopsis tonkinensischloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Yuan Zheng Yana Luo Yunqing Li Yi Wang The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis Mitochondrial DNA. Part B. Resources caryodaphnopsis tonkinensis chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis |
| title_full | The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis |
| title_fullStr | The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis |
| title_full_unstemmed | The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis |
| title_short | The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis |
| title_sort | complete chloroplast genome sequence of caryodaphnopsis tonkinensis |
| topic | caryodaphnopsis tonkinensis chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1698997 |
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