Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae)
Calocedrus rupestris is listed as endangered on the IUCN Red List. In this study, we report the complete chloroplast genome (plastome) of C. rupestris. The plastome was 127,298 bp in length and encodes 118 unique genes, including 83 protein-coding genes (PCGs), 31 tRNAs, and 4 rRNAs. Nine PCGs conta...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1565972 |
| _version_ | 1797640546374647808 |
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| author | Xiao-Jian Qu |
| author_facet | Xiao-Jian Qu |
| author_sort | Xiao-Jian Qu |
| collection | DOAJ |
| description | Calocedrus rupestris is listed as endangered on the IUCN Red List. In this study, we report the complete chloroplast genome (plastome) of C. rupestris. The plastome was 127,298 bp in length and encodes 118 unique genes, including 83 protein-coding genes (PCGs), 31 tRNAs, and 4 rRNAs. Nine PCGs contained one intron each and two PCGs contained two introns each. Six tRNAs contained one intron each. The overall GC content of this plastome was 34.8%. The phylogenomic analysis revealed that C. rupestris was sister to C. macrolepis and C. formosana with strong support. |
| first_indexed | 2024-03-11T13:32:36Z |
| format | Article |
| id | doaj.art-8fe76ee12d634f3b94ed5031b54d9920 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:32:36Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-8fe76ee12d634f3b94ed5031b54d99202023-11-02T16:07:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014176276310.1080/23802359.2019.15659721565972Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae)Xiao-Jian Qu0Institute of Biomedical Sciences, College of Life Sciences, Shandong Normal UniversityCalocedrus rupestris is listed as endangered on the IUCN Red List. In this study, we report the complete chloroplast genome (plastome) of C. rupestris. The plastome was 127,298 bp in length and encodes 118 unique genes, including 83 protein-coding genes (PCGs), 31 tRNAs, and 4 rRNAs. Nine PCGs contained one intron each and two PCGs contained two introns each. Six tRNAs contained one intron each. The overall GC content of this plastome was 34.8%. The phylogenomic analysis revealed that C. rupestris was sister to C. macrolepis and C. formosana with strong support.http://dx.doi.org/10.1080/23802359.2019.1565972calocedrus rupestriscupressaceaeplastomephylogenomics |
| spellingShingle | Xiao-Jian Qu Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) Mitochondrial DNA. Part B. Resources calocedrus rupestris cupressaceae plastome phylogenomics |
| title | Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) |
| title_full | Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) |
| title_fullStr | Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) |
| title_full_unstemmed | Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) |
| title_short | Complete plastome sequence of an endangered species, Calocedrus rupestris (Cupressaceae) |
| title_sort | complete plastome sequence of an endangered species calocedrus rupestris cupressaceae |
| topic | calocedrus rupestris cupressaceae plastome phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2019.1565972 |
| work_keys_str_mv | AT xiaojianqu completeplastomesequenceofanendangeredspeciescalocedrusrupestriscupressaceae |