The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico
Abstract Background Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected in the United States, leaving genetic variability among globally di...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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BMC
2024-03-01
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| Series: | BMC Genomics |
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s12864-024-10163-y |
| _version_ | 1797275766213312512 |
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| author | Monica Santin Aleksey Molokin Guadalupe E. Orozco-Mosqueda Sonia Almeria Jenny Maloney |
| author_facet | Monica Santin Aleksey Molokin Guadalupe E. Orozco-Mosqueda Sonia Almeria Jenny Maloney |
| author_sort | Monica Santin |
| collection | DOAJ |
| description | Abstract Background Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected in the United States, leaving genetic variability among globally distributed isolates underexplored. Results In the present study, the genome of an isolate of C. cayetanensis obtained from a child with diarrhea living in Mexico was sequenced and assembled. Evaluation of the assembly using a lineage typing system recently developed by the Centers for Disease Control and Prevention revealed that this isolate is lineage A. Conclusions Given that the only other whole genome assembly available from Mexico was classified as lineage B, the data presented here represent an important step in expanding our knowledge of the diversity of C. cayetanensis isolates from Mexico at the genomic level. |
| first_indexed | 2024-03-07T15:19:08Z |
| format | Article |
| id | doaj.art-903d09998dc94fe0a617b38d29b44304 |
| institution | Directory Open Access Journal |
| issn | 1471-2164 |
| language | English |
| last_indexed | 2024-03-07T15:19:08Z |
| publishDate | 2024-03-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomics |
| spelling | doaj.art-903d09998dc94fe0a617b38d29b443042024-03-05T17:47:06ZengBMCBMC Genomics1471-21642024-03-012511810.1186/s12864-024-10163-yThe first Cyclospora cayetanensis lineage A genome from an isolate from MexicoMonica Santin0Aleksey Molokin1Guadalupe E. Orozco-Mosqueda2Sonia Almeria3Jenny Maloney4Environmental Microbial and Food Safety Laboratory, Agricultural Research Service, Department of AgricultureEnvironmental Microbial and Food Safety Laboratory, Agricultural Research Service, Department of AgricultureHospital Infantil de Morelia Eva Sámano de López Mateos, Servicio de Salud de MichoacánU.S. Food and Drug Administration, Center for Food Safety and Applied Nutrition, Office of Applied Research and Safety Assessment, Division of Virulence AssessmentEnvironmental Microbial and Food Safety Laboratory, Agricultural Research Service, Department of AgricultureAbstract Background Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected in the United States, leaving genetic variability among globally distributed isolates underexplored. Results In the present study, the genome of an isolate of C. cayetanensis obtained from a child with diarrhea living in Mexico was sequenced and assembled. Evaluation of the assembly using a lineage typing system recently developed by the Centers for Disease Control and Prevention revealed that this isolate is lineage A. Conclusions Given that the only other whole genome assembly available from Mexico was classified as lineage B, the data presented here represent an important step in expanding our knowledge of the diversity of C. cayetanensis isolates from Mexico at the genomic level.https://doi.org/10.1186/s12864-024-10163-yCyclospora cayetanensisGenomeMexicoLineage A |
| spellingShingle | Monica Santin Aleksey Molokin Guadalupe E. Orozco-Mosqueda Sonia Almeria Jenny Maloney The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico BMC Genomics Cyclospora cayetanensis Genome Mexico Lineage A |
| title | The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico |
| title_full | The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico |
| title_fullStr | The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico |
| title_full_unstemmed | The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico |
| title_short | The first Cyclospora cayetanensis lineage A genome from an isolate from Mexico |
| title_sort | first cyclospora cayetanensis lineage a genome from an isolate from mexico |
| topic | Cyclospora cayetanensis Genome Mexico Lineage A |
| url | https://doi.org/10.1186/s12864-024-10163-y |
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