Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics
Some genetic systems frequently present ambiguous data that cannot be straightforwardly analyzed with common methods of population genetics. Two possibilities arise to analyze such data: one is the arbitrary simplification of the data and the other is the development of methods adapted to such ambig...
| Main Author: | |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
SAGE Publishing
2015-01-01
|
| Series: | Evolutionary Bioinformatics |
| Online Access: | https://doi.org/10.4137/EBO.S32415 |
| _version_ | 1819048349979901952 |
|---|---|
| author | José Manuel Nunes |
| author_facet | José Manuel Nunes |
| author_sort | José Manuel Nunes |
| collection | DOAJ |
| description | Some genetic systems frequently present ambiguous data that cannot be straightforwardly analyzed with common methods of population genetics. Two possibilities arise to analyze such data: one is the arbitrary simplification of the data and the other is the development of methods adapted to such ambiguous data. In this article, we present an attempt at such a development, the UNIFORMAT grammar and the GENEE[RATE] tools, highlighting the specific aspects and the adaptations required to analyze ambiguous nominal data in population genetics. |
| first_indexed | 2024-12-21T11:14:51Z |
| format | Article |
| id | doaj.art-907d9c1d92204391bbb16711e6acb52d |
| institution | Directory Open Access Journal |
| issn | 1176-9343 |
| language | English |
| last_indexed | 2024-12-21T11:14:51Z |
| publishDate | 2015-01-01 |
| publisher | SAGE Publishing |
| record_format | Article |
| series | Evolutionary Bioinformatics |
| spelling | doaj.art-907d9c1d92204391bbb16711e6acb52d2022-12-21T19:05:58ZengSAGE PublishingEvolutionary Bioinformatics1176-93432015-01-0111s210.4137/EBO.S32415Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population GeneticsJosé Manuel Nunes0Department of Genetics and Evolution, Anthropology Unit, University of Geneva, Geneva, Switzerland.Some genetic systems frequently present ambiguous data that cannot be straightforwardly analyzed with common methods of population genetics. Two possibilities arise to analyze such data: one is the arbitrary simplification of the data and the other is the development of methods adapted to such ambiguous data. In this article, we present an attempt at such a development, the UNIFORMAT grammar and the GENEE[RATE] tools, highlighting the specific aspects and the adaptations required to analyze ambiguous nominal data in population genetics.https://doi.org/10.4137/EBO.S32415 |
| spellingShingle | José Manuel Nunes Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics Evolutionary Bioinformatics |
| title | Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics |
| title_full | Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics |
| title_fullStr | Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics |
| title_full_unstemmed | Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics |
| title_short | Using UNIFORMAT and GENE[RATE] to Analyze Data with Ambiguities in Population Genetics |
| title_sort | using uniformat and gene rate to analyze data with ambiguities in population genetics |
| url | https://doi.org/10.4137/EBO.S32415 |
| work_keys_str_mv | AT josemanuelnunes usinguniformatandgeneratetoanalyzedatawithambiguitiesinpopulationgenetics |