Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis
Hordeum jubatum is a salt tolerant forage, which plays an important role in improving saline-alkali land and animal husbandry alkali-saline grassland. Hordeum jubatum has been gradually domesticated as an ornamental grass due to its special flower color. However, no domesticated varieties of H. juba...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1972868 |
| _version_ | 1797638723154739200 |
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| author | Zhenjiang Chen Yuanyuan Jin Xiuzhang Li Xuekai Wei Chunjie Li James F. White Zhibiao Nan |
| author_facet | Zhenjiang Chen Yuanyuan Jin Xiuzhang Li Xuekai Wei Chunjie Li James F. White Zhibiao Nan |
| author_sort | Zhenjiang Chen |
| collection | DOAJ |
| description | Hordeum jubatum is a salt tolerant forage, which plays an important role in improving saline-alkali land and animal husbandry alkali-saline grassland. Hordeum jubatum has been gradually domesticated as an ornamental grass due to its special flower color. However, no domesticated varieties of H. jubatum plant have been reported worldwide. This study reported the complete chloroplast genome of wild H. jubatum, which was 136,871 bp in length, containing a pair of inverted repeats (IRA/IRB) of 21,608 bp separated by a small single-copy (SSC) area region of 12,799 bp and the large single-copy (LSC) region of 80,856 bp. A total of 133 genes, including 85 protein-coding genes (79 PCG species), 40 transfer RNA genes (32 tRNA species), and eight ribosomal RNA genes (four rRNA species) were predicted from the chloroplast genomes. The overall GC content was 38.25%, and the corresponding values of the LSC, SSC, and IR were 36.22%, 32.15%, and 43.85%, respectively. The phylogenetic analysis showed that wild H. jubatum was clustered closely with Hordeum bogdanii. |
| first_indexed | 2024-03-11T13:07:38Z |
| format | Article |
| id | doaj.art-90b6d6d62d6549eba1a7703afef8df3d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:38Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-90b6d6d62d6549eba1a7703afef8df3d2023-11-03T14:28:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016102933293510.1080/23802359.2021.19728681972868Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysisZhenjiang Chen0Yuanyuan Jin1Xiuzhang Li2Xuekai Wei3Chunjie Li4James F. White5Zhibiao Nan6State Key Laboratory of Grassland Agro-Ecosystems, Lanzhou UniversityState Key Laboratory of Grassland Agro-Ecosystems, Lanzhou UniversityQinghai Academy of Animal and Veterinary Science, Qinghai UniversityState Key Laboratory of Grassland Agro-Ecosystems, Lanzhou UniversityState Key Laboratory of Grassland Agro-Ecosystems, Lanzhou UniversityDepartment of Plant Biology, Rutgers UniversityState Key Laboratory of Grassland Agro-Ecosystems, Lanzhou UniversityHordeum jubatum is a salt tolerant forage, which plays an important role in improving saline-alkali land and animal husbandry alkali-saline grassland. Hordeum jubatum has been gradually domesticated as an ornamental grass due to its special flower color. However, no domesticated varieties of H. jubatum plant have been reported worldwide. This study reported the complete chloroplast genome of wild H. jubatum, which was 136,871 bp in length, containing a pair of inverted repeats (IRA/IRB) of 21,608 bp separated by a small single-copy (SSC) area region of 12,799 bp and the large single-copy (LSC) region of 80,856 bp. A total of 133 genes, including 85 protein-coding genes (79 PCG species), 40 transfer RNA genes (32 tRNA species), and eight ribosomal RNA genes (four rRNA species) were predicted from the chloroplast genomes. The overall GC content was 38.25%, and the corresponding values of the LSC, SSC, and IR were 36.22%, 32.15%, and 43.85%, respectively. The phylogenetic analysis showed that wild H. jubatum was clustered closely with Hordeum bogdanii.http://dx.doi.org/10.1080/23802359.2021.1972868wild hordeum jubatumchloroplast genomephylogenetic analysisperennial herbsalt and alkali |
| spellingShingle | Zhenjiang Chen Yuanyuan Jin Xiuzhang Li Xuekai Wei Chunjie Li James F. White Zhibiao Nan Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis Mitochondrial DNA. Part B. Resources wild hordeum jubatum chloroplast genome phylogenetic analysis perennial herb salt and alkali |
| title | Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis |
| title_full | Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis |
| title_fullStr | Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis |
| title_short | Characterization of the complete chloroplast genome of Hordeum jubatum (Poaceae: Pooideae: Triticeae) and phylogenetic analysis |
| title_sort | characterization of the complete chloroplast genome of hordeum jubatum poaceae pooideae triticeae and phylogenetic analysis |
| topic | wild hordeum jubatum chloroplast genome phylogenetic analysis perennial herb salt and alkali |
| url | http://dx.doi.org/10.1080/23802359.2021.1972868 |
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