Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in dist...
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| Format: | Article |
| Language: | English |
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Elsevier
2018-06-01
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| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234091830218X |
| _version_ | 1828451013811503104 |
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| author | Palaniappan Sivasankar Bhagwan Rekadwad Subramaniam Poongodi Kannan Sivakumar Bhaskar Venkateswaran Parli N. Anil Kumar |
| author_facet | Palaniappan Sivasankar Bhagwan Rekadwad Subramaniam Poongodi Kannan Sivakumar Bhaskar Venkateswaran Parli N. Anil Kumar |
| author_sort | Palaniappan Sivasankar |
| collection | DOAJ |
| description | Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19]. Keywords: Psychrophile, Psychrotolerant, Antarctic Ocean, Polar Front, Marine Actinobacteria |
| first_indexed | 2024-12-10T23:29:52Z |
| format | Article |
| id | doaj.art-90c9f6473a064963813a2cc7b37b1162 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-10T23:29:52Z |
| publishDate | 2018-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-90c9f6473a064963813a2cc7b37b11622022-12-22T01:29:25ZengElsevierData in Brief2352-34092018-06-0118576584Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern OceanPalaniappan Sivasankar0Bhagwan Rekadwad1Subramaniam Poongodi2Kannan Sivakumar3Bhaskar Venkateswaran Parli4N. Anil Kumar5Department of Environmental Science, Periyar University, Periyar Palkalai Nagar, Salem 636011, Tamil Nadu, IndiaNational Centre for Microbial Resource, National Centre for Cell Science, Pune 411021, India; Corresponding author.Centre of Advanced Study in Marine Biology, Faculty of Marine Sciences, Annamalai University, Parangipettai 608502, Tamil Nadu, IndiaCentre of Advanced Study in Marine Biology, Faculty of Marine Sciences, Annamalai University, Parangipettai 608502, Tamil Nadu, IndiaNational Centre for Antarctic and Ocean Research, Headland Sada, Vasco-da-Gama, Goa 403804, IndiaNational Centre for Antarctic and Ocean Research, Headland Sada, Vasco-da-Gama, Goa 403804, IndiaIdentification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19]. Keywords: Psychrophile, Psychrotolerant, Antarctic Ocean, Polar Front, Marine Actinobacteriahttp://www.sciencedirect.com/science/article/pii/S235234091830218X |
| spellingShingle | Palaniappan Sivasankar Bhagwan Rekadwad Subramaniam Poongodi Kannan Sivakumar Bhaskar Venkateswaran Parli N. Anil Kumar Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean Data in Brief |
| title | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
| title_full | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
| title_fullStr | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
| title_full_unstemmed | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
| title_short | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
| title_sort | bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the polar frontal waters of the southern ocean |
| url | http://www.sciencedirect.com/science/article/pii/S235234091830218X |
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