Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method
The goal of this study was to analyse the population genetic structure of the Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River with mtDNA control region (Dloop gene) and DNA sequencing method during 2010 – 2012 sturgeon stock assessment project. Fish speciemns were...
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| Format: | Article |
| Language: | fas |
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Iranian Fisheries Research Organization
2014-01-01
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| Series: | Majallah-i ̒Ilmī-i Shīlāt-i Īrān |
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| Online Access: | http://isfj.areo.ir/article_103686_en.html |
| _version_ | 1811314935849811968 |
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| author | F. Chakmehdouz Ghasemi email ; M. Pourkazemi; M. Yarmohammadi; M. Hasanzadeh Saber; A. Ghoroghi; L. Azizzadeh Pormehr |
| author_facet | F. Chakmehdouz Ghasemi email ; M. Pourkazemi; M. Yarmohammadi; M. Hasanzadeh Saber; A. Ghoroghi; L. Azizzadeh Pormehr |
| author_sort | F. Chakmehdouz Ghasemi email ; M. Pourkazemi; M. Yarmohammadi; M. Hasanzadeh Saber; A. Ghoroghi; L. Azizzadeh Pormehr |
| collection | DOAJ |
| description | The goal of this study was to analyse the population genetic structure of the Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River with mtDNA control region (Dloop gene) and DNA sequencing method during 2010 – 2012 sturgeon stock assessment project. Fish speciemns were collected by bottom trawl net. Extraction of DNA, PCR and DNA sequencing were carried out. Diversity index, the gamma distribution shape parameter for the rate heterogeneity among sites and nucleotide sequence, Fst index, exact test, the historical demographic pattern using neutrality tests and mismatch distribution analysis (D test of Tajima and Fs test of Fu) were analysed. Thirteen haplotypes were obtained, average (±SD) for haplotype diversity was 0.961 ± 0.101, nucleotide diversity was 0.038 ± 0.015, the gamma distribution shape parameter was 0.19, Fst index revealed little genetic structure between populations and the significant Fst value was seen by 10000 permutation only b..... |
| first_indexed | 2024-04-13T11:20:00Z |
| format | Article |
| id | doaj.art-90d613882171404dac406e1ee6fd83a5 |
| institution | Directory Open Access Journal |
| issn | 1026-1354 2322-5998 |
| language | fas |
| last_indexed | 2024-04-13T11:20:00Z |
| publishDate | 2014-01-01 |
| publisher | Iranian Fisheries Research Organization |
| record_format | Article |
| series | Majallah-i ̒Ilmī-i Shīlāt-i Īrān |
| spelling | doaj.art-90d613882171404dac406e1ee6fd83a52022-12-22T02:48:50ZfasIranian Fisheries Research OrganizationMajallah-i ̒Ilmī-i Shīlāt-i Īrān1026-13542322-59982014-01-012321120Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing methodF. Chakmehdouz Ghasemi email ; M. Pourkazemi; M. Yarmohammadi; M. Hasanzadeh Saber; A. Ghoroghi; L. Azizzadeh PormehrThe goal of this study was to analyse the population genetic structure of the Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River with mtDNA control region (Dloop gene) and DNA sequencing method during 2010 – 2012 sturgeon stock assessment project. Fish speciemns were collected by bottom trawl net. Extraction of DNA, PCR and DNA sequencing were carried out. Diversity index, the gamma distribution shape parameter for the rate heterogeneity among sites and nucleotide sequence, Fst index, exact test, the historical demographic pattern using neutrality tests and mismatch distribution analysis (D test of Tajima and Fs test of Fu) were analysed. Thirteen haplotypes were obtained, average (±SD) for haplotype diversity was 0.961 ± 0.101, nucleotide diversity was 0.038 ± 0.015, the gamma distribution shape parameter was 0.19, Fst index revealed little genetic structure between populations and the significant Fst value was seen by 10000 permutation only b.....http://isfj.areo.ir/article_103686_en.htmlAcipenser persicus; population genetic structure; SOUTH CASPIAN SEA; DNA sequencing |
| spellingShingle | F. Chakmehdouz Ghasemi email ; M. Pourkazemi; M. Yarmohammadi; M. Hasanzadeh Saber; A. Ghoroghi; L. Azizzadeh Pormehr Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method Majallah-i ̒Ilmī-i Shīlāt-i Īrān Acipenser persicus; population genetic structure; SOUTH CASPIAN SEA; DNA sequencing |
| title | Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method |
| title_full | Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method |
| title_fullStr | Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method |
| title_full_unstemmed | Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method |
| title_short | Population genetic structure of Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River using DNA sequencing method |
| title_sort | population genetic structure of persian sturgeon acipenser persicus between south caspian sea and sefidrud river using dna sequencing method |
| topic | Acipenser persicus; population genetic structure; SOUTH CASPIAN SEA; DNA sequencing |
| url | http://isfj.areo.ir/article_103686_en.html |
| work_keys_str_mv | AT fchakmehdouzghasemiemailmpourkazemimyarmohammadimhasanzadehsaberaghoroghilazizzadehpormehr populationgeneticstructureofpersiansturgeonacipenserpersicusbetweensouthcaspianseaandsefidrudriverusingdnasequencingmethod |