A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L.
Background Shading is an important factor affecting the cultivation of American ginseng, as it influences crop quality and yield. Rhizosphere microorganisms are also crucial for normal plant growth and development. However, whether different shade types significantly change American ginseng rhizosph...
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| Format: | Article |
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PeerJ Inc.
2022-02-01
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| Online Access: | https://peerj.com/articles/12807.pdf |
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| author | Xianchang Wang Xu Guo Lijuan Hou Jiaohong Zhang Jing Hu Feng Zhang Jilei Mao Zhifen Wang Congjing Zhang Jinlong Han Yanwei Zhu Chao Liu Jinyue Sun Chenggang Shan |
| author_facet | Xianchang Wang Xu Guo Lijuan Hou Jiaohong Zhang Jing Hu Feng Zhang Jilei Mao Zhifen Wang Congjing Zhang Jinlong Han Yanwei Zhu Chao Liu Jinyue Sun Chenggang Shan |
| author_sort | Xianchang Wang |
| collection | DOAJ |
| description | Background Shading is an important factor affecting the cultivation of American ginseng, as it influences crop quality and yield. Rhizosphere microorganisms are also crucial for normal plant growth and development. However, whether different shade types significantly change American ginseng rhizosphere microorganisms is unknown. Methods This study evaluated the rhizosphere soils of American ginseng under traditional, high flag and high arch shade sheds. High-throughput 16S rRNA gene sequencing determined the change of rhizosphere bacterial communities. Results The microbial diversity in rhizosphere soils of American ginseng significantly changed under different shading conditions. The bacteria diversity was more abundant in the high arch shade than flat and traditional shades. Different bacterial genera, including Bradyrhizobium, Rhizobium, Sphingomonas, Streptomyces and Nitrospira, showed significantly different abundances. Different shading conditions changed the microbial metabolic function in the American ginseng rhizosphere soils. The three types of shade sheds had specific enriched functional groups. The abundance of ATP-binding cassette (ABC) transporters consistently increased in the bacterial microbiota. These results help understand the influence of shading systems on the rhizosphere microecology of American ginseng, and contribute to the American ginseng cultivation. |
| first_indexed | 2024-03-09T08:04:34Z |
| format | Article |
| id | doaj.art-9147be7202604e728fd2272702a1b283 |
| institution | Directory Open Access Journal |
| issn | 2167-8359 |
| language | English |
| last_indexed | 2024-03-09T08:04:34Z |
| publishDate | 2022-02-01 |
| publisher | PeerJ Inc. |
| record_format | Article |
| series | PeerJ |
| spelling | doaj.art-9147be7202604e728fd2272702a1b2832023-12-03T00:25:20ZengPeerJ Inc.PeerJ2167-83592022-02-0110e1280710.7717/peerj.12807A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L.Xianchang Wang0Xu Guo1Lijuan Hou2Jiaohong Zhang3Jing Hu4Feng Zhang5Jilei Mao6Zhifen Wang7Congjing Zhang8Jinlong Han9Yanwei Zhu10Chao Liu11Jinyue Sun12Chenggang Shan13Key Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaWeihai Academy of Agricultural Sciences, Weihai, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaWeihai Academy of Agricultural Sciences, Weihai, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaWeihai Academy of Agricultural Sciences, Weihai, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaKey Laboratory of Novel Food Resources Processing, Ministry of Agriculture and Rural Affairs/Research Center of Medicinal Plant, Shandong Academy of Agricultural Sciences/Institute of Agro-Food Science and Technology, Shandong Academy of Agricultural Sciences, Jinan, ChinaBackground Shading is an important factor affecting the cultivation of American ginseng, as it influences crop quality and yield. Rhizosphere microorganisms are also crucial for normal plant growth and development. However, whether different shade types significantly change American ginseng rhizosphere microorganisms is unknown. Methods This study evaluated the rhizosphere soils of American ginseng under traditional, high flag and high arch shade sheds. High-throughput 16S rRNA gene sequencing determined the change of rhizosphere bacterial communities. Results The microbial diversity in rhizosphere soils of American ginseng significantly changed under different shading conditions. The bacteria diversity was more abundant in the high arch shade than flat and traditional shades. Different bacterial genera, including Bradyrhizobium, Rhizobium, Sphingomonas, Streptomyces and Nitrospira, showed significantly different abundances. Different shading conditions changed the microbial metabolic function in the American ginseng rhizosphere soils. The three types of shade sheds had specific enriched functional groups. The abundance of ATP-binding cassette (ABC) transporters consistently increased in the bacterial microbiota. These results help understand the influence of shading systems on the rhizosphere microecology of American ginseng, and contribute to the American ginseng cultivation.https://peerj.com/articles/12807.pdfAmerican ginsengShade shedBacteriaRhizosphereSoil16s rRNA |
| spellingShingle | Xianchang Wang Xu Guo Lijuan Hou Jiaohong Zhang Jing Hu Feng Zhang Jilei Mao Zhifen Wang Congjing Zhang Jinlong Han Yanwei Zhu Chao Liu Jinyue Sun Chenggang Shan A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. PeerJ American ginseng Shade shed Bacteria Rhizosphere Soil 16s rRNA |
| title | A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. |
| title_full | A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. |
| title_fullStr | A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. |
| title_full_unstemmed | A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. |
| title_short | A comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of Panax quiquefolium L. |
| title_sort | comparative study of bacterial diversity based on effects of three different shade shed types in the rhizosphere of panax quiquefolium l |
| topic | American ginseng Shade shed Bacteria Rhizosphere Soil 16s rRNA |
| url | https://peerj.com/articles/12807.pdf |
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