The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia)
AbstractThis study reports the first mitogenome from the antipatharian (black coral) genus Cirrhipathes (GenBank accession number ON653414). The 20,452 bp mitochondrial genome of Cirrhipathes cf. anguina LS-2022 consists of 13 protein-coding genes, two rRNA genes, and two tRNA genes (trnM and trnW)....
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2024-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2310130 |
| _version_ | 1797244430536671232 |
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| author | Leah E. K. Shizuru Anthony D. Montgomery Daniel Wagner Evan B. Freel Robert J. Toonen |
| author_facet | Leah E. K. Shizuru Anthony D. Montgomery Daniel Wagner Evan B. Freel Robert J. Toonen |
| author_sort | Leah E. K. Shizuru |
| collection | DOAJ |
| description | AbstractThis study reports the first mitogenome from the antipatharian (black coral) genus Cirrhipathes (GenBank accession number ON653414). The 20,452 bp mitochondrial genome of Cirrhipathes cf. anguina LS-2022 consists of 13 protein-coding genes, two rRNA genes, and two tRNA genes (trnM and trnW). The mitogenome is typical of other antipatharian families, including an A + T biased (64.1%) base composition and cytochrome c oxidase subunit I (COX1) intron with embedded homing endonuclease gene (HEG). A phylogenetic tree based on complete mitogenome sequences of currently available antipatharians indicates Cirrhipathes cf. anguina LS-2022 is sister and closely related to Stichopathes sp. SCBUCN-8849. However, it seems unlikely that intergeneric taxa share 99.97% similarity across their complete mitogenomes, raising questions about the current taxonomy of this group. This study highlights the need for additional vouchered antipatharian species to be sequenced so phylogenetic relationships can be compared with accepted taxonomy. |
| first_indexed | 2024-03-07T19:08:30Z |
| format | Article |
| id | doaj.art-916e4f60407641b5b019295b9f22cc00 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-04-24T19:10:53Z |
| publishDate | 2024-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-916e4f60407641b5b019295b9f22cc002024-03-26T11:21:35ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-02-019222322610.1080/23802359.2024.2310130The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia)Leah E. K. Shizuru0Anthony D. Montgomery1Daniel Wagner2Evan B. Freel3Robert J. Toonen4Hawai‘i Institute of Marine Biology, University of Hawai‘i at Mānoa, Kāne‘ohe, HI, USAUS Fish and Wildlife Service, Pacific Fish and Wildlife Office, Honolulu, HI, USAOcean Exploration Trust, Honolulu, HI, USAHawai‘i Institute of Marine Biology, University of Hawai‘i at Mānoa, Kāne‘ohe, HI, USAHawai‘i Institute of Marine Biology, University of Hawai‘i at Mānoa, Kāne‘ohe, HI, USAAbstractThis study reports the first mitogenome from the antipatharian (black coral) genus Cirrhipathes (GenBank accession number ON653414). The 20,452 bp mitochondrial genome of Cirrhipathes cf. anguina LS-2022 consists of 13 protein-coding genes, two rRNA genes, and two tRNA genes (trnM and trnW). The mitogenome is typical of other antipatharian families, including an A + T biased (64.1%) base composition and cytochrome c oxidase subunit I (COX1) intron with embedded homing endonuclease gene (HEG). A phylogenetic tree based on complete mitogenome sequences of currently available antipatharians indicates Cirrhipathes cf. anguina LS-2022 is sister and closely related to Stichopathes sp. SCBUCN-8849. However, it seems unlikely that intergeneric taxa share 99.97% similarity across their complete mitogenomes, raising questions about the current taxonomy of this group. This study highlights the need for additional vouchered antipatharian species to be sequenced so phylogenetic relationships can be compared with accepted taxonomy.https://www.tandfonline.com/doi/10.1080/23802359.2024.2310130Black coralHawaiimesophotic coral ecosystemStichopathesAntipathes |
| spellingShingle | Leah E. K. Shizuru Anthony D. Montgomery Daniel Wagner Evan B. Freel Robert J. Toonen The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) Mitochondrial DNA. Part B. Resources Black coral Hawaii mesophotic coral ecosystem Stichopathes Antipathes |
| title | The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) |
| title_full | The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) |
| title_fullStr | The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) |
| title_full_unstemmed | The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) |
| title_short | The complete mitochondrial genome of a species of Cirrhipathes de Blainville, 1830 from Kauaʻi, Hawaiʻi (Hexacorallia: Antipatharia) |
| title_sort | complete mitochondrial genome of a species of cirrhipathes de blainville 1830 from kaua i hawai i hexacorallia antipatharia |
| topic | Black coral Hawaii mesophotic coral ecosystem Stichopathes Antipathes |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2310130 |
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