Characterization of the complete chloroplast genome sequence of Actinidia kolomikta
The whole complete chloroplast (cp) genome sequence of Actinidia kolomikta (formerly A. maloide) was sequenced and assembled from Illumina paired-end sequencing. The cp genome of A. arguta was 157,425 bp long, containing a large single copy region (LSC) of 88,498 bp and a small single copy region (S...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1902408 |
| _version_ | 1827772545084948480 |
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| author | Dongping Qiu Ping Tang Xiaohong Yao |
| author_facet | Dongping Qiu Ping Tang Xiaohong Yao |
| author_sort | Dongping Qiu |
| collection | DOAJ |
| description | The whole complete chloroplast (cp) genome sequence of Actinidia kolomikta (formerly A. maloide) was sequenced and assembled from Illumina paired-end sequencing. The cp genome of A. arguta was 157,425 bp long, containing a large single copy region (LSC) of 88,498 bp and a small single copy region (SSC) of 20,475 bp and a pair of inverted repeat regions (IR) of 242,266 bp. It contained 113 different genes, including 79 protein-coding genes, 30 tRNA genes, 4 ribosomal RNA genes. Phylogenetic analysis using concatenated alignments of whole cp genome sequences revealed that A. kolomikta was the sister group to all other groups of Actinidia |
| first_indexed | 2024-03-11T13:09:48Z |
| format | Article |
| id | doaj.art-91ee434bb89249aeb2f04a08de1e9f04 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:09:48Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-91ee434bb89249aeb2f04a08de1e9f042023-11-03T14:16:08ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-01631129113010.1080/23802359.2021.19024081902408Characterization of the complete chloroplast genome sequence of Actinidia kolomiktaDongping Qiu0Ping Tang1Xiaohong Yao2College of Forestry Science and Technology, Lishui Vocational and Technical CollegeKey Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, The Chinese Academy of SciencesKey Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, The Chinese Academy of SciencesThe whole complete chloroplast (cp) genome sequence of Actinidia kolomikta (formerly A. maloide) was sequenced and assembled from Illumina paired-end sequencing. The cp genome of A. arguta was 157,425 bp long, containing a large single copy region (LSC) of 88,498 bp and a small single copy region (SSC) of 20,475 bp and a pair of inverted repeat regions (IR) of 242,266 bp. It contained 113 different genes, including 79 protein-coding genes, 30 tRNA genes, 4 ribosomal RNA genes. Phylogenetic analysis using concatenated alignments of whole cp genome sequences revealed that A. kolomikta was the sister group to all other groups of Actinidiahttp://dx.doi.org/10.1080/23802359.2021.1902408actinidia kolomiktachloroplast genomeactinidiaceaephylogenetic analysis |
| spellingShingle | Dongping Qiu Ping Tang Xiaohong Yao Characterization of the complete chloroplast genome sequence of Actinidia kolomikta Mitochondrial DNA. Part B. Resources actinidia kolomikta chloroplast genome actinidiaceae phylogenetic analysis |
| title | Characterization of the complete chloroplast genome sequence of Actinidia kolomikta |
| title_full | Characterization of the complete chloroplast genome sequence of Actinidia kolomikta |
| title_fullStr | Characterization of the complete chloroplast genome sequence of Actinidia kolomikta |
| title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Actinidia kolomikta |
| title_short | Characterization of the complete chloroplast genome sequence of Actinidia kolomikta |
| title_sort | characterization of the complete chloroplast genome sequence of actinidia kolomikta |
| topic | actinidia kolomikta chloroplast genome actinidiaceae phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1902408 |
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