Characterization of the complete chloroplast genome of Begonia handelii
Begonia is the fifth largest genus of angiosperms in the world, and Begonia handelii is a member of the Begonia(Begoniaceae), and is one of the few species with floral fragrance in this genus. However, the chloroplast genome structure and phylogenetic relationship of this species is still unclear. I...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2119107 |
| _version_ | 1797638586123681792 |
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| author | Xiaozhen Zhu Xinghua Hu Shixun Huang Qifeng Lu Ting Liao |
| author_facet | Xiaozhen Zhu Xinghua Hu Shixun Huang Qifeng Lu Ting Liao |
| author_sort | Xiaozhen Zhu |
| collection | DOAJ |
| description | Begonia is the fifth largest genus of angiosperms in the world, and Begonia handelii is a member of the Begonia(Begoniaceae), and is one of the few species with floral fragrance in this genus. However, the chloroplast genome structure and phylogenetic relationship of this species is still unclear. In this study, the chloroplast genome of B. handelii was sequenced by Illumina HiSeq X platform, and the phylogenetic relationship of this species in Begonia was analyzed with related species. The whole chloroplast genome of B. handelii is 169,406 bp in size, which consist one large single-copy region (LSC) with 95,403 bp, one small single-copy region (SSC) with 20,089 bp, and two inverted repeat regions (IR) with 26,957 bp. The GC content of this chloroplast genome is 35.6%. Moreover, 140 genes were found in the chloroplast of B. handelii, including 90 protein-coding genes, 8 rRNA genes, 42 tRNA genes. Phylogenetic analysis showed that B. handelii is closed to B. coptidifolia and B. pulchrifolia. This study lays the foundation for further research on the chloroplast genome evolution of B. handelii chloroplasts. |
| first_indexed | 2024-03-11T13:04:43Z |
| format | Article |
| id | doaj.art-938bb293ae714241b87512a810e04f5d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:43Z |
| publishDate | 2022-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-938bb293ae714241b87512a810e04f5d2023-11-03T14:44:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-12-017122031203410.1080/23802359.2022.21191072119107Characterization of the complete chloroplast genome of Begonia handeliiXiaozhen Zhu0Xinghua Hu1Shixun Huang2Qifeng Lu3Ting Liao4Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesGuangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesBegonia is the fifth largest genus of angiosperms in the world, and Begonia handelii is a member of the Begonia(Begoniaceae), and is one of the few species with floral fragrance in this genus. However, the chloroplast genome structure and phylogenetic relationship of this species is still unclear. In this study, the chloroplast genome of B. handelii was sequenced by Illumina HiSeq X platform, and the phylogenetic relationship of this species in Begonia was analyzed with related species. The whole chloroplast genome of B. handelii is 169,406 bp in size, which consist one large single-copy region (LSC) with 95,403 bp, one small single-copy region (SSC) with 20,089 bp, and two inverted repeat regions (IR) with 26,957 bp. The GC content of this chloroplast genome is 35.6%. Moreover, 140 genes were found in the chloroplast of B. handelii, including 90 protein-coding genes, 8 rRNA genes, 42 tRNA genes. Phylogenetic analysis showed that B. handelii is closed to B. coptidifolia and B. pulchrifolia. This study lays the foundation for further research on the chloroplast genome evolution of B. handelii chloroplasts.http://dx.doi.org/10.1080/23802359.2022.2119107begonia handeliichloroplast genomehigh-throughput sequencingphylogenetic analysis |
| spellingShingle | Xiaozhen Zhu Xinghua Hu Shixun Huang Qifeng Lu Ting Liao Characterization of the complete chloroplast genome of Begonia handelii Mitochondrial DNA. Part B. Resources begonia handelii chloroplast genome high-throughput sequencing phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Begonia handelii |
| title_full | Characterization of the complete chloroplast genome of Begonia handelii |
| title_fullStr | Characterization of the complete chloroplast genome of Begonia handelii |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Begonia handelii |
| title_short | Characterization of the complete chloroplast genome of Begonia handelii |
| title_sort | characterization of the complete chloroplast genome of begonia handelii |
| topic | begonia handelii chloroplast genome high-throughput sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2022.2119107 |
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