Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii
Abies kawakamii is endemic to the island of Taiwan and has been listed as a threatened species in the Red List. In present study, we reported the complete chloroplast genome of A. kawakamii. The chloroplast genome is 121,290 bp in size. It was composed of 114 genes and they were 68 peptide-encoding...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1535856 |
| _version_ | 1797640627120242688 |
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| author | Yi-Zhen Shao Yun Chen Xiao-Fang Lu Yong-Zhong Ye Zhi-Liang Yuan |
| author_facet | Yi-Zhen Shao Yun Chen Xiao-Fang Lu Yong-Zhong Ye Zhi-Liang Yuan |
| author_sort | Yi-Zhen Shao |
| collection | DOAJ |
| description | Abies kawakamii is endemic to the island of Taiwan and has been listed as a threatened species in the Red List. In present study, we reported the complete chloroplast genome of A. kawakamii. The chloroplast genome is 121,290 bp in size. It was composed of 114 genes and they were 68 peptide-encoding genes, 35 tRNA genes, four rRNA genes, six open reading frames and one pseudogene. Loss of ndh genes was identified in the genome of A. kawakamii. Inverted repeat sequences include trnS–psaM–ycf12–trnG and trnG–ycf12–psaM–trnS were recognized in 52-kb inversion points. The phylogenetic analysis confirms that the Abies species are strongly supported as monophyletic. The complete plastome of A. kawakamii will provide potential genetic resources for further conservation and management strategies. |
| first_indexed | 2024-03-11T13:33:40Z |
| format | Article |
| id | doaj.art-946ac6a1f6b8434585f27a19bbe4100a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:40Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-946ac6a1f6b8434585f27a19bbe4100a2023-11-02T16:07:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-0141293010.1080/23802359.2018.15358561535856Next-generation sequencing yields the complete chloroplast genome of Abies kawakamiiYi-Zhen Shao0Yun Chen1Xiao-Fang Lu2Yong-Zhong Ye3Zhi-Liang Yuan4Henan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityHenan Agriculture UniversityAbies kawakamii is endemic to the island of Taiwan and has been listed as a threatened species in the Red List. In present study, we reported the complete chloroplast genome of A. kawakamii. The chloroplast genome is 121,290 bp in size. It was composed of 114 genes and they were 68 peptide-encoding genes, 35 tRNA genes, four rRNA genes, six open reading frames and one pseudogene. Loss of ndh genes was identified in the genome of A. kawakamii. Inverted repeat sequences include trnS–psaM–ycf12–trnG and trnG–ycf12–psaM–trnS were recognized in 52-kb inversion points. The phylogenetic analysis confirms that the Abies species are strongly supported as monophyletic. The complete plastome of A. kawakamii will provide potential genetic resources for further conservation and management strategies.http://dx.doi.org/10.1080/23802359.2018.1535856abies kawakamiichloroplast genomethreatenedphylogenetic |
| spellingShingle | Yi-Zhen Shao Yun Chen Xiao-Fang Lu Yong-Zhong Ye Zhi-Liang Yuan Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii Mitochondrial DNA. Part B. Resources abies kawakamii chloroplast genome threatened phylogenetic |
| title | Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii |
| title_full | Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii |
| title_fullStr | Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii |
| title_full_unstemmed | Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii |
| title_short | Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii |
| title_sort | next generation sequencing yields the complete chloroplast genome of abies kawakamii |
| topic | abies kawakamii chloroplast genome threatened phylogenetic |
| url | http://dx.doi.org/10.1080/23802359.2018.1535856 |
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