The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)
Coelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy re...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1823264 |
| _version_ | 1797639085880246272 |
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| author | Ziyang Yue Huixia Kao Yu Zhang Tiemei Wang Shubin Dong Jin Cheng |
| author_facet | Ziyang Yue Huixia Kao Yu Zhang Tiemei Wang Shubin Dong Jin Cheng |
| author_sort | Ziyang Yue |
| collection | DOAJ |
| description | Coelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy region (LSC) of 87,444 bp. The genome encodes 137 genes, including 91 protein-coding genes (PCGs), 38 tRNA genes and 8 rRNA genes. And the overall GC content is 37.40%. In addition, our phylogenetic analysis based on cp genome revealed the phylogenetic relationship between C. fimbriata and other 22 species in Orchidaceae. |
| first_indexed | 2024-03-11T13:12:49Z |
| format | Article |
| id | doaj.art-952f4a9a80ab4e7f834f9e3dbe3640e9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:49Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-952f4a9a80ab4e7f834f9e3dbe3640e92023-11-03T14:00:33ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533440344210.1080/23802359.2020.18232641823264The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae)Ziyang Yue0Huixia Kao1Yu Zhang2Tiemei Wang3Shubin Dong4Jin Cheng5College of Biological Sciences and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityCollege of Biological Sciences and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityBeijing Botanical Garden, Beijing Floriculture Engineering Technology Research Centre, Beijing Laboratory of Urban and Rural Ecological EnvironmentSchool of Grassland Science, Beijing Forestry UniversityCollege of Biological Sciences and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityBeijing Advanced Innovation Center for Tree Breeding by Molecular DesignCoelogyne fimbriata is an important orchid species with high medicinal value. Its complete chloroplast genome is 158,935 bp in length, which possesses the typical structure consising of a small single-copy region (SSC) of 18,743 bp, two inverted repeats (IRs) of 26,374 bp, and a large-single copy region (LSC) of 87,444 bp. The genome encodes 137 genes, including 91 protein-coding genes (PCGs), 38 tRNA genes and 8 rRNA genes. And the overall GC content is 37.40%. In addition, our phylogenetic analysis based on cp genome revealed the phylogenetic relationship between C. fimbriata and other 22 species in Orchidaceae.http://dx.doi.org/10.1080/23802359.2020.1823264coelogyne fimbriatacomplete chloroplast genomeorchidaceaephylogenomics |
| spellingShingle | Ziyang Yue Huixia Kao Yu Zhang Tiemei Wang Shubin Dong Jin Cheng The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) Mitochondrial DNA. Part B. Resources coelogyne fimbriata complete chloroplast genome orchidaceae phylogenomics |
| title | The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) |
| title_full | The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) |
| title_fullStr | The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) |
| title_short | The complete chloroplast genome sequence of a medicinal orchid species Coelogyne fimbriata (Orchidaceae) |
| title_sort | complete chloroplast genome sequence of a medicinal orchid species coelogyne fimbriata orchidaceae |
| topic | coelogyne fimbriata complete chloroplast genome orchidaceae phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2020.1823264 |
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