Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
Fritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1674742 |
| _version_ | 1797639655234994176 |
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| author | Peng Che Xueping Wei Yichen Song Bengang Zhang Haitao Liu Yaodong Qi |
| author_facet | Peng Che Xueping Wei Yichen Song Bengang Zhang Haitao Liu Yaodong Qi |
| author_sort | Peng Che |
| collection | DOAJ |
| description | Fritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy (LSC) region of 81,757 bp and one small single-copy (SSC) region of 17,537 bp and separated by a pair of inverted repeat (IR) regions of 26,322 bp. A total of 112 unique genes (78 protein-coding, 30 tRNA, and 4 rRNA) are predicted and 19 of them are duplicated in IR regions. The overall GC content is 37.0% while the GC content of the LSC, SSC, and IR regions are 34.8, 30.5, and 42.5%, separately. Phylogenetic analysis indicated that F. delavayi was closely related to F. cirrhosa. |
| first_indexed | 2024-03-11T13:19:41Z |
| format | Article |
| id | doaj.art-95447243ad944c0c9df5646f49c6795e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:41Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-95447243ad944c0c9df5646f49c6795e2023-11-03T10:38:49ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423492349310.1080/23802359.2019.16747421674742Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in ChinaPeng Che0Xueping Wei1Yichen Song2Bengang Zhang3Haitao Liu4Yaodong Qi5Chinese Academy of Medical Sciences, Peking Union Medical CollegeChinese Academy of Medical Sciences, Peking Union Medical CollegeChinese Academy of Medical Sciences, Peking Union Medical CollegeChinese Academy of Medical Sciences, Peking Union Medical CollegeChinese Academy of Medical Sciences, Peking Union Medical CollegeChinese Academy of Medical Sciences, Peking Union Medical CollegeFritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy (LSC) region of 81,757 bp and one small single-copy (SSC) region of 17,537 bp and separated by a pair of inverted repeat (IR) regions of 26,322 bp. A total of 112 unique genes (78 protein-coding, 30 tRNA, and 4 rRNA) are predicted and 19 of them are duplicated in IR regions. The overall GC content is 37.0% while the GC content of the LSC, SSC, and IR regions are 34.8, 30.5, and 42.5%, separately. Phylogenetic analysis indicated that F. delavayi was closely related to F. cirrhosa.http://dx.doi.org/10.1080/23802359.2019.1674742fritillaria delavayichloroplast genomephylogenetic analysis |
| spellingShingle | Peng Che Xueping Wei Yichen Song Bengang Zhang Haitao Liu Yaodong Qi Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China Mitochondrial DNA. Part B. Resources fritillaria delavayi chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China |
| title_full | Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China |
| title_fullStr | Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China |
| title_short | Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China |
| title_sort | characterization of the complete chloroplast genome sequence of fritillaria delavayi an ethnomedicinal plant in china |
| topic | fritillaria delavayi chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1674742 |
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