Metabarcoding by Combining Environmental DNA with Environmental RNA to Monitor Fish Species in the Han River, Korea

Metabarcoding by Combining Environmental DNA with Environmental RNA to Monitor Fish Species in the Han River, Korea

Fishes are ecologically important organisms that have long lifespans, high mobilities, and diverse trophic levels. Due to their importance, fishes are used as bioindicators for monitoring aquatic environments. One method for monitoring fishes is based on environmental DNA (eDNA), which are the deoxy...

Full description

Bibliographic Details
Main Authors:	Hyung-Eun An, Min-Ho Mun, Chang-Bae Kim
Format:	Article
Language:	English
Published:	MDPI AG 2023-11-01
Series:	Fishes
Subjects:	fish metabarcoding eDNA eRNA monitoring Han River
Online Access:	https://www.mdpi.com/2410-3888/8/11/550

Similar Items

Cage transplant experiment shows weak transport effect on relative abundance of fish community composition as revealed by eDNA metabarcoding
by: M. Laporte, et al.
Published: (2022-04-01)

Assessment of fish biodiversity in four Korean rivers using environmental DNA metabarcoding
by: Md Jobaidul Alam, et al.
Published: (2020-07-01)

Environmental DNA Metabarcoding Analysis of Fish Assemblages and Phytoplankton Communities in a Furrowed Seabed Area Caused by Aggregate Mining
by: Eun-Bi Kim, et al.
Published: (2022-03-01)

Application of eDNA metabarcoding in a fragmented lowland river: Spatial and methodological comparison of fish species composition
by: Caterina M. Antognazza, et al.
Published: (2021-03-01)

Proper environmental DNA metabarcoding data transformation reveals temporal stability of fish communities in a dendritic river system
by: Martin Laporte, et al.
Published: (2021-09-01)

Environmental DNA Metabarcoding Reflects Fish DNA Dynamics in Lentic Ecosystems: A Case Study of Freshwater Ponds
by: Lu Shu, et al.
Published: (2022-09-01)

Maximizing sampling efficiency to detect differences in fish community composition using environmental DNA metabarcoding in subarctic fjords
by: Gledis Guri, et al.
Published: (2024-01-01)

Beyond species detection—leveraging environmental DNA and environmental RNA to push beyond presence/absence applications
by: M. C. Yates, et al.
Published: (2023-09-01)

Detection of Fish Pathogens in Freshwater Aquaculture Using eDNA Methods
by: Kailash Bohara, et al.
Published: (2022-11-01)

Inferring functional diversity from environmental DNA metabarcoding
by: Céline Condachou, et al.
Published: (2023-09-01)

Evaluation of community science monitoring with environmental DNA for marine fish species: “Fish survey project using environmental DNA”
by: Yukari Suzuki‐Ohno, et al.
Published: (2023-05-01)

Comparison of environmental DNA metabarcoding and bottom trawling for detecting seasonal fish communities and habitat preference in a highly disturbed estuary
by: Peiwen Jiang, et al.
Published: (2023-02-01)

Applications of eDNA Metabarcoding for Vertebrate Diversity Studies in Northern Colombian Water Bodies
by: Juan Diego Lozano Mojica, et al.
Published: (2021-01-01)

Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA
by: Magdalena Guardiola, et al.
Published: (2016-12-01)

Estuarine fishes associated with intertidal oyster reefs characterized using environmental DNA and baited remote underwater video
by: Victoria J. Cole, et al.
Published: (2022-01-01)

Environmental DNA and RNA as Records of Human Exposome, Including Biotic/Abiotic Exposures and Its Implications in the Assessment of the Role of Environment in Chronic Diseases
by: Indu Shekhar Thakur, et al.
Published: (2020-07-01)

Validating environmental DNA metabarcoding for marine fishes in diverse ecosystems using a public aquarium
by: Kevin C. Morey, et al.
Published: (2020-07-01)

Monitoring the birds and the bees: Environmental DNA metabarcoding of flowers detects plant–animal interactions
by: Joshua P. Newton, et al.
Published: (2023-05-01)

Leveraging eDNA metabarcoding to characterize nearshore fish communities in Southeast Alaska: Do habitat and tide matter?
by: Wesley A. Larson, et al.
Published: (2022-07-01)

Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
by: Gert‐Jan Jeunen, et al.
Published: (2019-02-01)

12S gene metabarcoding with DNA standard quantifies marine bony fish environmental DNA, identifies threshold for reproducible detection, and overcomes distortion due to amplification of non‐fish DNA
by: Mark Y. Stoeckle, et al.
Published: (2024-01-01)

The effect of tides on nearshore environmental DNA
by: Ryan P. Kelly, et al.
Published: (2018-03-01)

Evaluating the effectiveness of the eRNA technique in monitoring fish biodiversity – A case study in the Qingdao offshore, China
by: Wenqiong Li, et al.
Published: (2024-06-01)

Improved Environmental DNA Reference Library Detects Overlooked Marine Fishes in New Jersey, United States
by: Mark Y. Stoeckle, et al.
Published: (2020-05-01)

Application of eDNA Metabarcoding for Detecting Anura on a Tropical Island
by: Wenhao Li, et al.
Published: (2021-09-01)

Fish Biomonitoring and Ecological Assessment in the Dianchi Lake Basin Based on Environmental DNA
by: Han Meng, et al.
Published: (2023-01-01)

An environmental DNA metabarcoding approach versus a visual survey for reefs of Koh Pha‐ngan in Thailand
by: Fabian Gösser, et al.
Published: (2023-03-01)

Answers blowing in the wind: Detection of birds, mammals, and amphibians with airborne environmental DNA in a natural environment over a yearlong survey
by: Mark D. Johnson, et al.
Published: (2023-03-01)

Environmental DNA reveals temporal variation in mesophotic reefs of the Humboldt upwelling ecosystems of central Chile: Toward a baseline for biodiversity monitoring of unexplored marine habitats
by: Pablo Saenz‐Agudelo, et al.
Published: (2024-02-01)

Biodiversity assessment across a dynamic riverine system: A comparison of eDNA metabarcoding versus traditional fish surveying methods
by: Jane Hallam, et al.
Published: (2021-11-01)

Optimization of environmental DNA analysis using pumped deep-sea water for the monitoring of fish biodiversity
by: Takao Yoshida, et al.
Published: (2023-01-01)

A National Scale “BioBlitz” Using Citizen Science and eDNA Metabarcoding for Monitoring Coastal Marine Fish
by: Sune Agersnap, et al.
Published: (2022-03-01)

Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance
by: Holly A. Bowers, et al.
Published: (2021-04-01)

Monitoring newt communities in urban area using eDNA metabarcoding
by: Léo Charvoz, et al.
Published: (2021-11-01)

A manager’s guide to using eDNA metabarcoding in marine ecosystems
by: Zachary Gold, et al.
Published: (2022-11-01)

Vertical eDNA distribution of cold‐water fishes in response to environmental variables in stratified lake
by: Kayoko Fukumori, et al.
Published: (2024-03-01)

Environmental RNA applications and their associated gene targets for management and conservation
by: Jessica D. Stevens, et al.
Published: (2023-03-01)

Novel Mitochondrial DNA Markers for Scleractinian Corals and Generic-Level Environmental DNA Metabarcoding
by: Chuya Shinzato, et al.
Published: (2021-11-01)

eDNA Metabarcoding Benchmarked towards Conventional Survey Methods in Amphibian Monitoring
by: Anne Katrine Nørgaard Svenningsen, et al.
Published: (2022-03-01)

Are Genetic Reference Libraries Sufficient for Environmental DNA Metabarcoding of Mekong River Basin Fish?
by: Christopher L. Jerde, et al.
Published: (2021-06-01)