Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis
Eriocheir leptognathus is a dominant species in the Yangtze River estuary. In this study, we first determined the complete mitochondrial genome (mitogenome) of E. leptognathus. The mitogenome is 16,143 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribo...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1535858 |
| _version_ | 1797640627795525632 |
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| author | YiMing Yuan YanLong He ShouHai Liu Xiao Ji YuTao Qin XiaoBo Wang |
| author_facet | YiMing Yuan YanLong He ShouHai Liu Xiao Ji YuTao Qin XiaoBo Wang |
| author_sort | YiMing Yuan |
| collection | DOAJ |
| description | Eriocheir leptognathus is a dominant species in the Yangtze River estuary. In this study, we first determined the complete mitochondrial genome (mitogenome) of E. leptognathus. The mitogenome is 16,143 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and one non-coding control region. Initiation codons ATG and ATT were identified in eight and four PCGs, respectively, while stop codons TAA or TAG were found in eleven genes except for two genes which use incomplete stop codon T–. The phylogenetic analysis indicated that three species (E. hepuensis, E.japonica, E. sinensis) and E. leptognathus are very closely related. The complete mitogenome of E. leptognathus can provide population genetics information to further explore the taxonomic status of this species. |
| first_indexed | 2024-03-11T13:33:40Z |
| format | Article |
| id | doaj.art-9738088c39a441f0a14c986cef0d17a2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:40Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9738088c39a441f0a14c986cef0d17a22023-11-02T16:07:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-0141313210.1080/23802359.2018.15358581535858Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysisYiMing Yuan0YanLong He1ShouHai Liu2Xiao Ji3YuTao Qin4XiaoBo Wang5East China Sea Environmental Monitoring Center of State Oceanic AdministrationEast China Sea Environmental Monitoring Center of State Oceanic AdministrationEast China Sea Environmental Monitoring Center of State Oceanic AdministrationEast China Sea Environmental Monitoring Center of State Oceanic AdministrationEast China Sea Environmental Monitoring Center of State Oceanic AdministrationEast China Sea Environmental Monitoring Center of State Oceanic AdministrationEriocheir leptognathus is a dominant species in the Yangtze River estuary. In this study, we first determined the complete mitochondrial genome (mitogenome) of E. leptognathus. The mitogenome is 16,143 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and one non-coding control region. Initiation codons ATG and ATT were identified in eight and four PCGs, respectively, while stop codons TAA or TAG were found in eleven genes except for two genes which use incomplete stop codon T–. The phylogenetic analysis indicated that three species (E. hepuensis, E.japonica, E. sinensis) and E. leptognathus are very closely related. The complete mitogenome of E. leptognathus can provide population genetics information to further explore the taxonomic status of this species.http://dx.doi.org/10.1080/23802359.2018.1535858eriocheir leptognathuscomplete mitochondrial genomephylogenetic analysiscomparative mitogenomic analysis |
| spellingShingle | YiMing Yuan YanLong He ShouHai Liu Xiao Ji YuTao Qin XiaoBo Wang Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis Mitochondrial DNA. Part B. Resources eriocheir leptognathus complete mitochondrial genome phylogenetic analysis comparative mitogenomic analysis |
| title | Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis |
| title_full | Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis |
| title_fullStr | Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis |
| title_full_unstemmed | Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis |
| title_short | Characterization of the complete mitochondrial genome of Eriocheir leptognathus with phylogenetic analysis |
| title_sort | characterization of the complete mitochondrial genome of eriocheir leptognathus with phylogenetic analysis |
| topic | eriocheir leptognathus complete mitochondrial genome phylogenetic analysis comparative mitogenomic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1535858 |
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