Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy.
Assessment and monitoring of soil organic matter (SOM) quality are important for understanding SOM dynamics and developing management practices that will enhance and maintain the productivity of agricultural soils. Visible and near-infrared (Vis-NIR) diffuse reflectance spectroscopy (350-2500 nm) ha...
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| Format: | Article |
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Public Library of Science (PLoS)
2016-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC4790961?pdf=render |
| _version_ | 1818042921079799808 |
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| author | Shengxiang Xu Xuezheng Shi Meiyan Wang Yongcun Zhao |
| author_facet | Shengxiang Xu Xuezheng Shi Meiyan Wang Yongcun Zhao |
| author_sort | Shengxiang Xu |
| collection | DOAJ |
| description | Assessment and monitoring of soil organic matter (SOM) quality are important for understanding SOM dynamics and developing management practices that will enhance and maintain the productivity of agricultural soils. Visible and near-infrared (Vis-NIR) diffuse reflectance spectroscopy (350-2500 nm) has received increasing attention over the recent decades as a promising technique for SOM analysis. While heterogeneity of sample sets is one critical factor that complicates the prediction of soil properties from Vis-NIR spectra, a spectral library representing the local soil diversity needs to be constructed. The study area, covering a surface of 927 km2 and located in Yujiang County of Jiangsu Province, is characterized by a hilly area with different soil parent materials (e.g., red sandstone, shale, Quaternary red clay, and river alluvium). In total, 232 topsoil (0-20 cm) samples were collected for SOM analysis and scanned with a Vis-NIR spectrometer in the laboratory. Reflectance data were related to surface SOM content by means of a partial least square regression (PLSR) method and several data pre-processing techniques, such as first and second derivatives with a smoothing filter. The performance of the PLSR model was tested under different combinations of calibration/validation sets (global and local calibrations stratified according to parent materials). The results showed that the models based on the global calibrations can only make approximate predictions for SOM content (RMSE (root mean squared error) = 4.23-4.69 g kg-1; R2 (coefficient of determination) = 0.80-0.84; RPD (ratio of standard deviation to RMSE) = 2.19-2.44; RPIQ (ratio of performance to inter-quartile distance) = 2.88-3.08). Under the local calibrations, the individual PLSR models for each parent material improved SOM predictions (RMSE = 2.55-3.49 g kg-1; R2 = 0.87-0.93; RPD = 2.67-3.12; RPIQ = 3.15-4.02). Among the four different parent materials, the largest R2 and the smallest RMSE were observed for the shale soils, which had the lowest coefficient of variation (CV) values for clay (18.95%), free iron oxides (15.93%), and pH (1.04%). This demonstrates the importance of a practical subsetting strategy for the continued improvement of SOM prediction with Vis-NIR spectroscopy. |
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| id | doaj.art-973f21a2956a40289de560a27b7f272a |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-10T08:53:59Z |
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| spelling | doaj.art-973f21a2956a40289de560a27b7f272a2022-12-22T01:55:29ZengPublic Library of Science (PLoS)PLoS ONE1932-62032016-01-01113e015153610.1371/journal.pone.0151536Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy.Shengxiang XuXuezheng ShiMeiyan WangYongcun ZhaoAssessment and monitoring of soil organic matter (SOM) quality are important for understanding SOM dynamics and developing management practices that will enhance and maintain the productivity of agricultural soils. Visible and near-infrared (Vis-NIR) diffuse reflectance spectroscopy (350-2500 nm) has received increasing attention over the recent decades as a promising technique for SOM analysis. While heterogeneity of sample sets is one critical factor that complicates the prediction of soil properties from Vis-NIR spectra, a spectral library representing the local soil diversity needs to be constructed. The study area, covering a surface of 927 km2 and located in Yujiang County of Jiangsu Province, is characterized by a hilly area with different soil parent materials (e.g., red sandstone, shale, Quaternary red clay, and river alluvium). In total, 232 topsoil (0-20 cm) samples were collected for SOM analysis and scanned with a Vis-NIR spectrometer in the laboratory. Reflectance data were related to surface SOM content by means of a partial least square regression (PLSR) method and several data pre-processing techniques, such as first and second derivatives with a smoothing filter. The performance of the PLSR model was tested under different combinations of calibration/validation sets (global and local calibrations stratified according to parent materials). The results showed that the models based on the global calibrations can only make approximate predictions for SOM content (RMSE (root mean squared error) = 4.23-4.69 g kg-1; R2 (coefficient of determination) = 0.80-0.84; RPD (ratio of standard deviation to RMSE) = 2.19-2.44; RPIQ (ratio of performance to inter-quartile distance) = 2.88-3.08). Under the local calibrations, the individual PLSR models for each parent material improved SOM predictions (RMSE = 2.55-3.49 g kg-1; R2 = 0.87-0.93; RPD = 2.67-3.12; RPIQ = 3.15-4.02). Among the four different parent materials, the largest R2 and the smallest RMSE were observed for the shale soils, which had the lowest coefficient of variation (CV) values for clay (18.95%), free iron oxides (15.93%), and pH (1.04%). This demonstrates the importance of a practical subsetting strategy for the continued improvement of SOM prediction with Vis-NIR spectroscopy.http://europepmc.org/articles/PMC4790961?pdf=render |
| spellingShingle | Shengxiang Xu Xuezheng Shi Meiyan Wang Yongcun Zhao Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. PLoS ONE |
| title | Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. |
| title_full | Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. |
| title_fullStr | Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. |
| title_full_unstemmed | Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. |
| title_short | Effects of Subsetting by Parent Materials on Prediction of Soil Organic Matter Content in a Hilly Area Using Vis-NIR Spectroscopy. |
| title_sort | effects of subsetting by parent materials on prediction of soil organic matter content in a hilly area using vis nir spectroscopy |
| url | http://europepmc.org/articles/PMC4790961?pdf=render |
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