estimateR: an R package to estimate and monitor the effective reproductive number

estimateR: an R package to estimate and monitor the effective reproductive number

Abstract Background Accurate estimation of the effective reproductive number ( $$R_e$$ R e ) of epidemic outbreaks is of central relevance to public health policy and decision making. We present estimateR, an R package for the estimation of the reproductive number through time from delayed observati...

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Bibliographic Details
Main Authors: Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler
Format: Article
Language:English
Published: BMC 2023-08-01
Series:BMC Bioinformatics
Subjects:
R package
Epidemiology
Effective reproductive number
Re
Rt
Surveillance
Online Access:https://doi.org/10.1186/s12859-023-05428-4

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