Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface
Highly accurate visualization of the points of transcranial magnetic stimulation (TMS) application on the brain cortical surface could provide anatomy-specific analysis of TMS effects. TMS is widely used to activate cortical areas with high spatial resolution, and neuronavigation enables site-specif...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-01-01
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| Series: | MethodsX |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S221501612300211X |
| _version_ | 1797796408140496896 |
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| author | Nikolay Syrov Alfiia Mustafina Artemiy Berkmush-Antipova Lev Yakovlev Andrey Demchinsky Daria Petrova Alexander Kaplan |
| author_facet | Nikolay Syrov Alfiia Mustafina Artemiy Berkmush-Antipova Lev Yakovlev Andrey Demchinsky Daria Petrova Alexander Kaplan |
| author_sort | Nikolay Syrov |
| collection | DOAJ |
| description | Highly accurate visualization of the points of transcranial magnetic stimulation (TMS) application on the brain cortical surface could provide anatomy-specific analysis of TMS effects. TMS is widely used to activate cortical areas with high spatial resolution, and neuronavigation enables site-specific TMS of particular gyrus sites. Precise control of TMS application points is crucial in determining the stimulation effects. Here, we propose a method that gives an opportunity to visualize and analyze the stimulated cortical sites by processing multi-parameter data. • This method uses MRI data to create a participant's brain model for visualization. The MRI data is segmented to obtain a raw 3D model, which is further optimized in 3D modeling software. • A Python script running in Blender uses the TMS coil's orientation data and participant's brain 3D model to define and mark the cortical sites affected by the particular TMS pulse. • The Python script can be easily customized to visualize TMS points task-specifically. |
| first_indexed | 2024-03-13T03:32:38Z |
| format | Article |
| id | doaj.art-979b89528f864463a82db7f431371614 |
| institution | Directory Open Access Journal |
| issn | 2215-0161 |
| language | English |
| last_indexed | 2024-03-13T03:32:38Z |
| publishDate | 2023-01-01 |
| publisher | Elsevier |
| record_format | Article |
| series | MethodsX |
| spelling | doaj.art-979b89528f864463a82db7f4313716142023-06-24T05:17:45ZengElsevierMethodsX2215-01612023-01-0110102213Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surfaceNikolay Syrov0Alfiia Mustafina1Artemiy Berkmush-Antipova2Lev Yakovlev3Andrey Demchinsky4Daria Petrova5Alexander Kaplan6Vladimir Zelman Center for Neurobiology and Brain Rehabilitation, Skolkovo Institute of Science and Technology, Moscow, Russia; Corresponding author.Department of Invertebrate Zoology, Faculty of Biology, Lomonosov Moscow State University, Moscow, RussiaBaltic Center Neurotechnology and Artificial Intelligence, Immanuel Kant Baltic Federal University, Kaliningrad, RussiaVladimir Zelman Center for Neurobiology and Brain Rehabilitation, Skolkovo Institute of Science and Technology, Moscow, Russia; Baltic Center Neurotechnology and Artificial Intelligence, Immanuel Kant Baltic Federal University, Kaliningrad, RussiaANO Laboratory Sensor-Tech, Moscow, RussiaVladimir Zelman Center for Neurobiology and Brain Rehabilitation, Skolkovo Institute of Science and Technology, Moscow, RussiaVladimir Zelman Center for Neurobiology and Brain Rehabilitation, Skolkovo Institute of Science and Technology, Moscow, Russia; Baltic Center Neurotechnology and Artificial Intelligence, Immanuel Kant Baltic Federal University, Kaliningrad, Russia; Department of Human and Animal Physiology, Faculty of Biology, Lomonosov Moscow State University, Moscow, RussiaHighly accurate visualization of the points of transcranial magnetic stimulation (TMS) application on the brain cortical surface could provide anatomy-specific analysis of TMS effects. TMS is widely used to activate cortical areas with high spatial resolution, and neuronavigation enables site-specific TMS of particular gyrus sites. Precise control of TMS application points is crucial in determining the stimulation effects. Here, we propose a method that gives an opportunity to visualize and analyze the stimulated cortical sites by processing multi-parameter data. • This method uses MRI data to create a participant's brain model for visualization. The MRI data is segmented to obtain a raw 3D model, which is further optimized in 3D modeling software. • A Python script running in Blender uses the TMS coil's orientation data and participant's brain 3D model to define and mark the cortical sites affected by the particular TMS pulse. • The Python script can be easily customized to visualize TMS points task-specifically.http://www.sciencedirect.com/science/article/pii/S221501612300211XTMS-affected Cortical points Visualization on MRI-based Brain Model. The software tool is implemented using the Python language and runs on the Blender software platform. It uses a subject-specific 3D model of the brain's cortical surface reconstructed from MRI data. The software marks the points of TMS application on the cortical surface |
| spellingShingle | Nikolay Syrov Alfiia Mustafina Artemiy Berkmush-Antipova Lev Yakovlev Andrey Demchinsky Daria Petrova Alexander Kaplan Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface MethodsX TMS-affected Cortical points Visualization on MRI-based Brain Model. The software tool is implemented using the Python language and runs on the Blender software platform. It uses a subject-specific 3D model of the brain's cortical surface reconstructed from MRI data. The software marks the points of TMS application on the cortical surface |
| title | Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface |
| title_full | Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface |
| title_fullStr | Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface |
| title_full_unstemmed | Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface |
| title_short | Single-Subject TMS Pulse Visualization on MRI-Based Brain Model: A precise method for mapping TMS pulses on cortical surface |
| title_sort | single subject tms pulse visualization on mri based brain model a precise method for mapping tms pulses on cortical surface |
| topic | TMS-affected Cortical points Visualization on MRI-based Brain Model. The software tool is implemented using the Python language and runs on the Blender software platform. It uses a subject-specific 3D model of the brain's cortical surface reconstructed from MRI data. The software marks the points of TMS application on the cortical surface |
| url | http://www.sciencedirect.com/science/article/pii/S221501612300211X |
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