Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China
Wild peach is an important resource for improving existing peach varieties. However, the extant populations of wild peach show fragmented distribution due to human disturbance and geographic isolation. In this study, we used natural populations (or wild populations) of <i>Prunus persica</i&...
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MDPI AG
2022-05-01
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| Series: | Plants |
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| Online Access: | https://www.mdpi.com/2223-7747/11/11/1458 |
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| author | Quan Jiang Qiang Xu Junfeng Pan Xiaohong Yao Zhongping Cheng |
| author_facet | Quan Jiang Qiang Xu Junfeng Pan Xiaohong Yao Zhongping Cheng |
| author_sort | Quan Jiang |
| collection | DOAJ |
| description | Wild peach is an important resource for improving existing peach varieties. However, the extant populations of wild peach show fragmented distribution due to human disturbance and geographic isolation. In this study, we used natural populations (or wild populations) of <i>Prunus persica</i> (Rosaceae) to assess the genetic effects of habitat fragmentation. A total of 368 individuals sampled from 16 natural populations were analyzed using 23 polymorphic simple sequence repeat (SSR) markers. <i>Prunus persica</i> maintained low within-population genetic variation and high level of genetic differentiation. Two genetic clusters were revealed based on three different methods (UPGMA, PCoA, and STRUCTURE). All populations showed a significant heterozygosity deficiency and most extant populations experienced recent reduction in population size. A significant isolation by distance (IBD) was observed with Mantel’s test. Compared to historical gene flow, contemporary gene flow was restricted among the studied populations, suggesting a decrease in gene flow due to habitat fragmentation. Habitat fragmentation has impacted population genetic variation and genetic structure of <i>P. persica</i>. For breeding and conservation purpose, collecting as many individuals as possible from multiple populations to maximize genetic diversity was recommended during the process of germplasm collection. In addition, populations from central China had higher genetic diversity, suggesting these populations should be given priority for conservation and germplasm collection. |
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| issn | 2223-7747 |
| language | English |
| last_indexed | 2024-03-10T00:58:52Z |
| publishDate | 2022-05-01 |
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| spelling | doaj.art-98cbdb1d942047a99900737d3498be4b2023-11-23T14:38:58ZengMDPI AGPlants2223-77472022-05-011111145810.3390/plants11111458Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in ChinaQuan Jiang0Qiang Xu1Junfeng Pan2Xiaohong Yao3Zhongping Cheng4Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, The Chinese Academy of Sciences, Wuhan 430074, ChinaShangrao Vocational and Technical College, Shangrao 334109, ChinaKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, The Chinese Academy of Sciences, Wuhan 430074, ChinaKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, The Chinese Academy of Sciences, Wuhan 430074, ChinaKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, The Chinese Academy of Sciences, Wuhan 430074, ChinaWild peach is an important resource for improving existing peach varieties. However, the extant populations of wild peach show fragmented distribution due to human disturbance and geographic isolation. In this study, we used natural populations (or wild populations) of <i>Prunus persica</i> (Rosaceae) to assess the genetic effects of habitat fragmentation. A total of 368 individuals sampled from 16 natural populations were analyzed using 23 polymorphic simple sequence repeat (SSR) markers. <i>Prunus persica</i> maintained low within-population genetic variation and high level of genetic differentiation. Two genetic clusters were revealed based on three different methods (UPGMA, PCoA, and STRUCTURE). All populations showed a significant heterozygosity deficiency and most extant populations experienced recent reduction in population size. A significant isolation by distance (IBD) was observed with Mantel’s test. Compared to historical gene flow, contemporary gene flow was restricted among the studied populations, suggesting a decrease in gene flow due to habitat fragmentation. Habitat fragmentation has impacted population genetic variation and genetic structure of <i>P. persica</i>. For breeding and conservation purpose, collecting as many individuals as possible from multiple populations to maximize genetic diversity was recommended during the process of germplasm collection. In addition, populations from central China had higher genetic diversity, suggesting these populations should be given priority for conservation and germplasm collection.https://www.mdpi.com/2223-7747/11/11/1458<i>Prunus persica</i>wild populationmicrosatelliteshabitat fragmentationgenetic diversity |
| spellingShingle | Quan Jiang Qiang Xu Junfeng Pan Xiaohong Yao Zhongping Cheng Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China Plants <i>Prunus persica</i> wild population microsatellites habitat fragmentation genetic diversity |
| title | Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China |
| title_full | Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China |
| title_fullStr | Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China |
| title_full_unstemmed | Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China |
| title_short | Impacts of Chronic Habitat Fragmentation on Genetic Diversity of Natural Populations of <i>Prunus persica</i> in China |
| title_sort | impacts of chronic habitat fragmentation on genetic diversity of natural populations of i prunus persica i in china |
| topic | <i>Prunus persica</i> wild population microsatellites habitat fragmentation genetic diversity |
| url | https://www.mdpi.com/2223-7747/11/11/1458 |
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