High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens
Strain P482 was isolated from a tomato rhizosphere and classified as Pseudomonas donghuensis. The P. donghuensis species was first established in 2015 and currently consists of only four strains: P482, HYST, SVBP6, and 22G5. P. donghuensis strains antagonize plant pathogens, including bacteria, fung...
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2021-12-01
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| Series: | Molecular Plant-Microbe Interactions |
| Subjects: | |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-06-21-0136-A |
| _version_ | 1818757280474071040 |
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| author | Dorota M. Krzyżanowska Adam Iwanicki Robert Czajkowski Sylwia Jafra |
| author_facet | Dorota M. Krzyżanowska Adam Iwanicki Robert Czajkowski Sylwia Jafra |
| author_sort | Dorota M. Krzyżanowska |
| collection | DOAJ |
| description | Strain P482 was isolated from a tomato rhizosphere and classified as Pseudomonas donghuensis. The P. donghuensis species was first established in 2015 and currently consists of only four strains: P482, HYST, SVBP6, and 22G5. P. donghuensis strains antagonize plant pathogens, including bacteria, fungi, and oomycetes, and, therefore, are of high interest regarding their biological control potential to combat plant diseases. The antimicrobial activity of P. donghuensis P482 is based on the production of iron-scavenging compound 7-hydroxytropolone, antifungal volatile organic compounds, and as-yet-unidentified secondary metabolites. Here, we report a complete genome resource for P. donghuensis strain P482. The genome consists of a single chromosome (5,656,185 bp) with 5,258 open reading frames (5,158 protein-coding genes, 74 transfer RNAs, 22 ribosomal RNAs, 3 noncoding RNAs, and 1 transfer-messenger RNA) and no plasmid. We believe that information on the first high-quality, complete genome of P. donghuensis will provide resources for analyses targeting the biological control potential of this species and understanding the traits essential for plant–microbe interaction.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
| first_indexed | 2024-12-18T06:08:26Z |
| format | Article |
| id | doaj.art-98e2b77694b546cebcb34e0304754b87 |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-12-18T06:08:26Z |
| publishDate | 2021-12-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-98e2b77694b546cebcb34e0304754b872022-12-21T21:18:29ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062021-12-0134121450145410.1094/MPMI-06-21-0136-AHigh-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant PathogensDorota M. Krzyżanowska0Adam Iwanicki1Robert Czajkowski2Sylwia Jafra3Laboratory of Plant Microbiology, Intercollegiate Faculty of Biotechnology of University of Gdańsk and Medical University of Gdańsk, University of Gdańsk, A. Abrahama 58, 80-307 Gdańsk, PolandDivision of Molecular Bacteriology, Intercollegiate Faculty of Biotechnology of University of Gdańsk and Medical University of Gdańsk, Medical University of Gdańsk, Gdańsk, Dębinki 1, 80-211, PolandLaboratory of Biologically Active Compounds, Intercollegiate Faculty of Biotechnology of University of Gdańsk and Medical University of Gdańsk, University of Gdańsk, A. Abrahama 58, 80-307 Gdańsk, PolandLaboratory of Plant Microbiology, Intercollegiate Faculty of Biotechnology of University of Gdańsk and Medical University of Gdańsk, University of Gdańsk, A. Abrahama 58, 80-307 Gdańsk, PolandStrain P482 was isolated from a tomato rhizosphere and classified as Pseudomonas donghuensis. The P. donghuensis species was first established in 2015 and currently consists of only four strains: P482, HYST, SVBP6, and 22G5. P. donghuensis strains antagonize plant pathogens, including bacteria, fungi, and oomycetes, and, therefore, are of high interest regarding their biological control potential to combat plant diseases. The antimicrobial activity of P. donghuensis P482 is based on the production of iron-scavenging compound 7-hydroxytropolone, antifungal volatile organic compounds, and as-yet-unidentified secondary metabolites. Here, we report a complete genome resource for P. donghuensis strain P482. The genome consists of a single chromosome (5,656,185 bp) with 5,258 open reading frames (5,158 protein-coding genes, 74 transfer RNAs, 22 ribosomal RNAs, 3 noncoding RNAs, and 1 transfer-messenger RNA) and no plasmid. We believe that information on the first high-quality, complete genome of P. donghuensis will provide resources for analyses targeting the biological control potential of this species and understanding the traits essential for plant–microbe interaction.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.https://apsjournals.apsnet.org/doi/10.1094/MPMI-06-21-0136-A7-hydroxytropolonebiological controlcomplete genomegenomicsPGPRPseudomonas donghuensis |
| spellingShingle | Dorota M. Krzyżanowska Adam Iwanicki Robert Czajkowski Sylwia Jafra High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens Molecular Plant-Microbe Interactions 7-hydroxytropolone biological control complete genome genomics PGPR Pseudomonas donghuensis |
| title | High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens |
| title_full | High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens |
| title_fullStr | High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens |
| title_full_unstemmed | High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens |
| title_short | High-Quality Complete Genome Resource of Tomato Rhizosphere Strain Pseudomonas donghuensis P482, a Representative of a Species with Biocontrol Activity Against Plant Pathogens |
| title_sort | high quality complete genome resource of tomato rhizosphere strain pseudomonas donghuensis p482 a representative of a species with biocontrol activity against plant pathogens |
| topic | 7-hydroxytropolone biological control complete genome genomics PGPR Pseudomonas donghuensis |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-06-21-0136-A |
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