Analyses of Long-Term Epidemic Trends and Evolution Characteristics of Haplotype Subtypes Reveal the Dynamic Selection on SARS-CoV-2

Analyses of Long-Term Epidemic Trends and Evolution Characteristics of Haplotype Subtypes Reveal the Dynamic Selection on SARS-CoV-2

The scale of SARS-CoV-2 infection and death is so enormous that further study of the molecular and evolutionary characteristics of SARS-CoV-2 will help us better understand and respond to SARS-CoV-2 outbreaks. The present study analyzed the epidemic and evolutionary characteristics of haplotype subt...

Full description

Bibliographic Details
Main Authors:	Binbin Xi, Yuhuan Meng, Dawei Jiang, Yunmeng Bai, Zixi Chen, Yimo Qu, Shuhua Li, Jinfen Wei, Lizhen Huang, Hongli Du
Format:	Article
Language:	English
Published:	MDPI AG 2022-02-01
Series:	Viruses
Subjects:	SARS-CoV-2 haplotype subtypes evolution epidemic trends Ka/Ks substitution rate
Online Access:	https://www.mdpi.com/1999-4915/14/3/454

Similar Items

KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-coding Sequences
by: Zhang Zhang
Published: (2022-06-01)

Natural selection shapes the evolution of SARS-CoV-2 Omicron in Bangladesh
by: Mohammad Tanbir Habib, et al.
Published: (2023-08-01)

Genome-Wide Identification and Expression Analysis of the SWEET Gene Family in <i>Capsicum annuum</i> L.
by: Xiaowen Han, et al.
Published: (2023-12-01)

Full-length transcriptome characterization and comparative analysis of Gleditsia sinensis
by: Feng Xiao, et al.
Published: (2023-12-01)

Evaluating the role of selection in the evolution of mitochondrial genomes of aboriginal peoples of Siberia
by: B. A. Malyarchuk, et al.
Published: (2023-06-01)

Sex-Biased Gene Expression and Evolution in the Cerebrum and Syrinx of Chinese Hwamei (<i>Garrulax canorus</i>)
by: Hua Jiang, et al.
Published: (2021-04-01)

Mitochondrial genome characteristics and phylogenetic analysis of the medicinal and edible plant Mesona chinensis Benth
by: Danfeng Tang, et al.
Published: (2023-01-01)

The most exposed regions of SARS-CoV-2 structural proteins are subject to strong positive selection and gene overlap may locally modify this behavior
by: Alejandro Rubio, et al.
Published: (2024-01-01)

Genetic divergence between populations of feral and domestic forms of a mosquito disease vector assessed by transcriptomics
by: Dana C. Price, et al.
Published: (2015-02-01)

Characterization of the Complete Mitochondrial Genome of the Spotted Catfish <i>Arius maculatus</i> (Thunberg, 1792) and Its Phylogenetic Implications
by: Min Yang, et al.
Published: (2022-11-01)

USING THE METHODS OF SYSTEMS BIOLOGY FOR PREDICTING PERSPECTIVE TARGET GENES TO SELECT C3 AND C4 CEREALS FOR OXIDATIVE STRESS RESISTANCE
by: A. V. Doroshkov, et al.
Published: (2018-03-01)

Haplotypes, sub-haplotypes and geographical distribution in Omani patients with sickle cell disease
by: Suha Mustafa Hassan, et al.
Published: (2015-05-01)

Genome-Wide Characterization, Identification and Expression Profile of MYB Transcription Factor Gene Family during Abiotic and Biotic Stresses in Mango (<i>Mangifera indica</i>)
by: He Zhang, et al.
Published: (2022-11-01)

Functional evolution of SARS-CoV-2 spike protein: Maintaining wide host spectrum and enhancing infectivity via surface charge of spike protein
by: Xiaolong Lu, et al.
Published: (2023-01-01)

Mitochondrial Genomes of two <i>Lycosa</i> spiders (Araneae, Lycosidae): Genome Description and Phylogenetic Implications
by: Wentao Ye, et al.
Published: (2022-07-01)

Molecular and Structural Evolution of Porcine Epidemic Diarrhea Virus
by: Baicheng Huang, et al.
Published: (2022-12-01)

A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
by: Salem Rany M, et al.
Published: (2005-03-01)

Establishment and Validation of Novel Prognostic Subtypes in Hepatocellular Carcinoma Based on Bile Acid Metabolism Gene Signatures Using Bulk and Single-Cell RNA-Seq Data
by: Yimo Qu, et al.
Published: (2024-01-01)

Noninvasive prenatal diagnosis of β‐thalassemia by relative haplotype dosage without analyzing proband
by: Haoxian Li, et al.
Published: (2019-11-01)

Effects of Single Nucleotide Polymorphism Marker Density on Haplotype Block Partition
by: Sun Ah Kim, et al.
Published: (2016-12-01)

Toward understanding the genetic basis of adaptation to high-elevation life in poikilothermic species: A comparative transcriptomic analysis of two ranid frogs, <it>Rana chensinensis</it> and <it>R. kukunoris</it>
by: Yang Weizhao, et al.
Published: (2012-11-01)

Evolution and epidemic success of Mycobacterium tuberculosis in eastern China: evidence from a prospective study
by: Zonglei Zhou, et al.
Published: (2023-05-01)

Haplotypes-based genetic analysis: benefits and challenges
by: D. Sehgal, et al.
Published: (2019-11-01)

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
by: Roeland E. Voorrips, et al.
Published: (2022-10-01)

Evaluating the effect of the plan of national syphilis control in controlling the syphilis epidemic in Jiangsu, China 2010–2020
by: Lingen Shi, et al.
Published: (2023-12-01)

Applications of KS - variables in celestial mechanics
by: MR Hassan, et al.
Published: (2010-12-01)

β-Globin Gene Cluster Haplotypes in Iranian Patients with β-Thalassemia
by: Rahimi Z., et al.
Published: (2005-09-01)

β-Globin Gene Cluster Haplotypes in Iranian Patients with β-Thalassemia
by: Z Rahimi, et al.
Published: (2005-09-01)

Analysis of epidemic trends and status of schistosomiasis in Jiangxi Province from 2002 to 2021
by: LI Yifeng, et al.
Published: (2023-07-01)

DEFINITION AND COMPARATIVE ANALYSIS OF THE GENOMIC STRUCTURE OF SIBERIAN STRAINS OF TICK-BORNE ENCEPHALITIS VIRUS OF THE EUROPEAN SUBTYPE
by: T. V. Demina, et al.
Published: (2018-02-01)

Pfcrt haplotypes and the evolutionary history of chloroquine-resistant Plasmodium falciparum
by: Gauri Awasthi, et al.
Published: (2012-02-01)

Śp. ks. prof. dr hab. Jerzy Pałucki (1955-2023)
by: Marcin Wysocki
Published: (2023-12-01)

Epidemics modeling
by: P. Knopov, et al.
Published: (2020-07-01)

Genetics of chloroquine-resistant malaria: a haplotypic view
by: Gauri Awasthi, et al.
Published: (2013-12-01)

Haplotype breeding for unlocking and utilizing plant genomics data
by: Mayank Rai, et al.
Published: (2022-11-01)

Echinococcus multilocularis genetic diversity based on isolates from pigs confirmed the characteristic haplotype distribution and the presence of the Asian-like haplotype in Central Europe
by: Karamon Jacek, et al.
Published: (2023-12-01)

The Contribution of <i>JAK2</i> 46/1 Haplotype in the Predisposition to Myeloproliferative Neoplasms
by: Jhemerson Paes, et al.
Published: (2022-10-01)

Intercellular Molecular Crosstalk Networks within Invasive and Immunosuppressive Tumor Microenvironment Subtypes Associated with Clinical Outcomes in Four Cancer Types
by: Jinfen Wei, et al.
Published: (2023-11-01)

Inferring Signatures of Positive Selection in Whole-Genome Sequencing Data: An Overview of Haplotype-Based Methods
by: Paolo Abondio, et al.
Published: (2022-05-01)

Contributions to the mathematical theory of epidemics /
by: 275431 Kermack, W. O., et al.