Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli
Multi-omics data integration is a great challenge. Here, the authors compile a database of E. coliproteomics, transcriptomics, metabolomics and fluxomics data to train models of recurrent neural network and constrained regression, enabling prediction of bacterial responses to perturbations.
Main Authors: | Minseung Kim, Navneet Rai, Violeta Zorraquino, Ilias Tagkopoulos |
---|---|
Format: | Article |
Language: | English |
Published: |
Nature Portfolio
2016-10-01
|
Series: | Nature Communications |
Online Access: | https://doi.org/10.1038/ncomms13090 |
Similar Items
-
Understanding the Formation and Mechanism of Anticipatory Responses in <i>Escherichia coli</i>
by: Navneet Rai, et al.
Published: (2022-05-01) -
Microbial forensics: predicting phenotypic characteristics and environmental conditions from large-scale gene expression profiles.
by: Minseung Kim, et al.
Published: (2015-03-01) -
Tolerance to Glutaraldehyde in Escherichia coli Mediated by Overexpression of the Aldehyde Reductase YqhD by YqhC
by: Beatriz Merchel Piovesan Pereira, et al.
Published: (2021-06-01) -
Biocide-Induced Emergence of Antibiotic Resistance in Escherichia coli
by: Beatriz Merchel Piovesan Pereira, et al.
Published: (2021-02-01) -
The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health
by: Ameen Eetemadi, et al.
Published: (2020-04-01)