The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae
Trachidermus fasciatus is a small catadromous fish and has been listed as a second class state protected aquatic animal since 1988 in China due to the declines in its abundance. We describe the complete mitogenome of T. fasciatus in this study. The mitogenome is 16,536 nucleotides long and contains...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1445480 |
| _version_ | 1827774304571359232 |
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| author | Kehua Zhu Zhenming Lü Liqing Liu Li Gong Bingjian Liu |
| author_facet | Kehua Zhu Zhenming Lü Liqing Liu Li Gong Bingjian Liu |
| author_sort | Kehua Zhu |
| collection | DOAJ |
| description | Trachidermus fasciatus is a small catadromous fish and has been listed as a second class state protected aquatic animal since 1988 in China due to the declines in its abundance. We describe the complete mitogenome of T. fasciatus in this study. The mitogenome is 16,536 nucleotides long and contains 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and two main non-coding regions. The overall base composition includes C (30%), A (26.3%), T (25.5%), and G (18.2%). Moreover, the 13 PCGs encode 3800 amino acids in total, all the PCGs use the initiation codon ATG except COI uses GTG. Most of them have TAA or TAG as the stop codon, except COII, ND4 and Cytb use an incomplete stop codon T. The phylogenetic tree based on the neighbour joining method was constructed to provide relationship within Cottidae, which could be a useful basis for management of this species. |
| first_indexed | 2024-03-11T13:35:34Z |
| format | Article |
| id | doaj.art-9a023ac5f2af49a085b116a8ddd80cdf |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:34Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9a023ac5f2af49a085b116a8ddd80cdf2023-11-02T15:57:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013130130210.1080/23802359.2018.14454801445480The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of CottidaeKehua Zhu0Zhenming Lü1Liqing Liu2Li Gong3Bingjian Liu4National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean UniversityNational Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean UniversityTrachidermus fasciatus is a small catadromous fish and has been listed as a second class state protected aquatic animal since 1988 in China due to the declines in its abundance. We describe the complete mitogenome of T. fasciatus in this study. The mitogenome is 16,536 nucleotides long and contains 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and two main non-coding regions. The overall base composition includes C (30%), A (26.3%), T (25.5%), and G (18.2%). Moreover, the 13 PCGs encode 3800 amino acids in total, all the PCGs use the initiation codon ATG except COI uses GTG. Most of them have TAA or TAG as the stop codon, except COII, ND4 and Cytb use an incomplete stop codon T. The phylogenetic tree based on the neighbour joining method was constructed to provide relationship within Cottidae, which could be a useful basis for management of this species.http://dx.doi.org/10.1080/23802359.2018.1445480trachidermus fasciatusmitogenomephylogenetic relationship |
| spellingShingle | Kehua Zhu Zhenming Lü Liqing Liu Li Gong Bingjian Liu The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae Mitochondrial DNA. Part B. Resources trachidermus fasciatus mitogenome phylogenetic relationship |
| title | The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae |
| title_full | The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae |
| title_fullStr | The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae |
| title_full_unstemmed | The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae |
| title_short | The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae |
| title_sort | complete mitochondrial genome of trachidermus fasciatus scorpaeniformes cottidae and phylogenetic studies of cottidae |
| topic | trachidermus fasciatus mitogenome phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2018.1445480 |
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