Towards reliable whole genome sequencing for outbreak preparedness and response

Towards reliable whole genome sequencing for outbreak preparedness and response

Abstract Background To understand the dynamics of infectious diseases, genomic epidemiology is increasingly advocated, with a need for rapid generation of genetic sequences during outbreaks for public health decision making. Here, we explore the use of metagenomic sequencing compared to specific amp...

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Bibliographic Details
Main Authors: David F. Nieuwenhuijse, Anne van der Linden, Robert H. G. Kohl, Reina S. Sikkema, Marion P. G. Koopmans, Bas B. Oude Munnink
Format: Article
Language:English
Published: BMC 2022-08-01
Series:BMC Genomics
Subjects:
Whole genome sequencing
Metagenomics
Arbovirus
Platform comparison
Long reads
Short reads
Online Access:https://doi.org/10.1186/s12864-022-08749-5

Internet

https://doi.org/10.1186/s12864-022-08749-5

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