The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea
We sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1961624 |
| _version_ | 1827772390288916480 |
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| author | Namjoo Heo Seona Yun Danilo D. Fernando |
| author_facet | Namjoo Heo Seona Yun Danilo D. Fernando |
| author_sort | Namjoo Heo |
| collection | DOAJ |
| description | We sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised of the following regions: large single copy (82,464 bp), small single copy (21,345 bp), and a pair of inverted repeats (22,792 bp). The overall GC content is 40.9% and the genome encoded a total of 115 genes, including 84 protein-coding, 27 transfer RNA, and 4 ribosomal RNA genes. Phylogenetic analysis based on 21 representative chloroplast genomes of the suborder Aspleniineae (and one outgroup) indicates that Aspleniaceae is monophyletic and sister to Diplaziopsidaceae, with Rhadidosoraceae as the basal group in this three family clade. Asplenium komarovii is sister to A. nidus and A. prolongatum with strong bootstrap support. The chloroplast genome of A. komarovii will be useful in establishing its relationships within the A. scolopendrium complex, which is currently unresolved. |
| first_indexed | 2024-03-11T13:07:40Z |
| format | Article |
| id | doaj.art-9ac1bf3be62f44fd850e28f12a137eb1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:40Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9ac1bf3be62f44fd850e28f12a137eb12023-11-03T14:28:29ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016103006300810.1080/23802359.2021.19616241961624The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South KoreaNamjoo Heo0Seona Yun1Danilo D. Fernando2Department of Environmental Biology, State University of New York College of Environmental Science and ForestryDepartment of Environmental Biology, State University of New York College of Environmental Science and ForestryDepartment of Environmental Biology, State University of New York College of Environmental Science and ForestryWe sequenced the complete chloroplast genome of Asplenium komarovii Akasawa (syn: Asplenium scolopendrium L. subsp. japonicum (Komarov) Rasbach, Reichstein & Viane), which is designated as a rare species in South Korea. The complete chloroplast genome is 149,393 bp in total length and comprised of the following regions: large single copy (82,464 bp), small single copy (21,345 bp), and a pair of inverted repeats (22,792 bp). The overall GC content is 40.9% and the genome encoded a total of 115 genes, including 84 protein-coding, 27 transfer RNA, and 4 ribosomal RNA genes. Phylogenetic analysis based on 21 representative chloroplast genomes of the suborder Aspleniineae (and one outgroup) indicates that Aspleniaceae is monophyletic and sister to Diplaziopsidaceae, with Rhadidosoraceae as the basal group in this three family clade. Asplenium komarovii is sister to A. nidus and A. prolongatum with strong bootstrap support. The chloroplast genome of A. komarovii will be useful in establishing its relationships within the A. scolopendrium complex, which is currently unresolved.http://dx.doi.org/10.1080/23802359.2021.1961624rare specieschloroplast genomeasplenium scolopendriumasplenium komarovii |
| spellingShingle | Namjoo Heo Seona Yun Danilo D. Fernando The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea Mitochondrial DNA. Part B. Resources rare species chloroplast genome asplenium scolopendrium asplenium komarovii |
| title | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
| title_full | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
| title_fullStr | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
| title_full_unstemmed | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
| title_short | The complete chloroplast genome sequence of Asplenium komarovii Akasawa, a rare fern in South Korea |
| title_sort | complete chloroplast genome sequence of asplenium komarovii akasawa a rare fern in south korea |
| topic | rare species chloroplast genome asplenium scolopendrium asplenium komarovii |
| url | http://dx.doi.org/10.1080/23802359.2021.1961624 |
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