Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria
African locust bean (Parkia biglobosa) is a multipurpose leguminous tree species of nutritional and pharmacological value. The plant is widely distributed in Africa and across Nigeria's major agroecological areas (AEAs). Amidst declining cultivation and production, P. biglobosa is genetically t...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2024-04-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340924001173 |
| _version_ | 1827313677037993984 |
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| author | Conrad A. Omonhinmin Nchedo S. Taiwo Paul B. Okonkwor Israel M. Ajayi Paul Akinniyi Akinduti Oluwadurotimi S. Aworunse Ibukun Ajiboye Olugbenga S. Taiwo Bosede Temitope Adekeye Olubukola Oziegbe Adetutu O. Bello Eze Frank Ahuekwe Joshua Oyekanmi Olanrewaju Olufowobi Margaret Ikhiwili Oniha Oyewumi Oshamika Samuel A. Ejoh Adeyemi G. Adewale Olayemi O. Akinnola Solomon U. Oranusi Jacob O. Popoola |
| author_facet | Conrad A. Omonhinmin Nchedo S. Taiwo Paul B. Okonkwor Israel M. Ajayi Paul Akinniyi Akinduti Oluwadurotimi S. Aworunse Ibukun Ajiboye Olugbenga S. Taiwo Bosede Temitope Adekeye Olubukola Oziegbe Adetutu O. Bello Eze Frank Ahuekwe Joshua Oyekanmi Olanrewaju Olufowobi Margaret Ikhiwili Oniha Oyewumi Oshamika Samuel A. Ejoh Adeyemi G. Adewale Olayemi O. Akinnola Solomon U. Oranusi Jacob O. Popoola |
| author_sort | Conrad A. Omonhinmin |
| collection | DOAJ |
| description | African locust bean (Parkia biglobosa) is a multipurpose leguminous tree species of nutritional and pharmacological value. The plant is widely distributed in Africa and across Nigeria's major agroecological areas (AEAs). Amidst declining cultivation and production, P. biglobosa is genetically threatened in its natural habitats due to overexploitation, deforestation, wildfires and lack of improved tree management practices. Consequently, concerted research efforts directed towards germplasm collection and assessment of genetic relationships are imperative for conserving its genetic resources, sustainable management and selecting promising landraces for breeding programmes. The dataset presents rbcL intraspecific genetic diversity and population structure of 62 P. biglobosa landraces in Nigeria. A relatively high level of diversity and a low degree of nucleotide variability was observed among the landraces. Relatively high values of 642 total allele sites, 601 polymorphic sites, 504 parsimony information sites, 883 total number mutations, 9 haplotypes and 0.55 gene diversity were recorded for the sequence dataset. Low values of 0.35 nucleotide diversity and 5 InDels events were also recorded for the dataset. The gene flow in this dataset demonstrated an extensive exchange of genes between the three populations of P. biglobosa, which influenced the level of genetic differentiation (Gst) between the populations. Significantly low Gst (-0.01) was recorded between the Guinea and Sudan savannah populations, a moderate value (0.03) was recorded between the Sudan savannah and Rainforest populations and a higher Gst value (0.05) was recorded between the Guinea and Rainforest populations. The dataset highlights potential evolutionary dynamics that might influence variations relevant to the breeding and conservation of P. biglobosa in Nigeria and across its range in West and Central Africa. |
| first_indexed | 2024-03-08T02:01:02Z |
| format | Article |
| id | doaj.art-9b5beb54f81644e994048ad90cade994 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-24T22:20:30Z |
| publishDate | 2024-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-9b5beb54f81644e994048ad90cade9942024-03-20T06:09:52ZengElsevierData in Brief2352-34092024-04-0153110146Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in NigeriaConrad A. Omonhinmin0Nchedo S. Taiwo1Paul B. Okonkwor2Israel M. Ajayi3Paul Akinniyi Akinduti4Oluwadurotimi S. Aworunse5Ibukun Ajiboye6Olugbenga S. Taiwo7Bosede Temitope Adekeye8Olubukola Oziegbe9Adetutu O. Bello10Eze Frank Ahuekwe11Joshua Oyekanmi12Olanrewaju Olufowobi13Margaret Ikhiwili Oniha14Oyewumi Oshamika15Samuel A. Ejoh16Adeyemi G. Adewale17Olayemi O. Akinnola18Solomon U. Oranusi19Jacob O. Popoola20Department of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, Nigeria; Corresponding authors.Department of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaInqaba Biotec West Africa Limited, Ibadan, Oyo State, NigeriaInqaba Biotec West Africa Limited, Ibadan, Oyo State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Civil Engineering, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, NigeriaDepartment of Biological Sciences/Biotechnology Cluster, Covenant University, Ota, Ogun State, Nigeria; Pure and Applied Biology Programme, College of Agriculture, Engineering and Science, Bowen University, Iwo, Nigeria; Corresponding authors.African locust bean (Parkia biglobosa) is a multipurpose leguminous tree species of nutritional and pharmacological value. The plant is widely distributed in Africa and across Nigeria's major agroecological areas (AEAs). Amidst declining cultivation and production, P. biglobosa is genetically threatened in its natural habitats due to overexploitation, deforestation, wildfires and lack of improved tree management practices. Consequently, concerted research efforts directed towards germplasm collection and assessment of genetic relationships are imperative for conserving its genetic resources, sustainable management and selecting promising landraces for breeding programmes. The dataset presents rbcL intraspecific genetic diversity and population structure of 62 P. biglobosa landraces in Nigeria. A relatively high level of diversity and a low degree of nucleotide variability was observed among the landraces. Relatively high values of 642 total allele sites, 601 polymorphic sites, 504 parsimony information sites, 883 total number mutations, 9 haplotypes and 0.55 gene diversity were recorded for the sequence dataset. Low values of 0.35 nucleotide diversity and 5 InDels events were also recorded for the dataset. The gene flow in this dataset demonstrated an extensive exchange of genes between the three populations of P. biglobosa, which influenced the level of genetic differentiation (Gst) between the populations. Significantly low Gst (-0.01) was recorded between the Guinea and Sudan savannah populations, a moderate value (0.03) was recorded between the Sudan savannah and Rainforest populations and a higher Gst value (0.05) was recorded between the Guinea and Rainforest populations. The dataset highlights potential evolutionary dynamics that might influence variations relevant to the breeding and conservation of P. biglobosa in Nigeria and across its range in West and Central Africa.http://www.sciencedirect.com/science/article/pii/S2352340924001173African locust beanBreedingConservationGenetic diversityPhylogeneticrbcL |
| spellingShingle | Conrad A. Omonhinmin Nchedo S. Taiwo Paul B. Okonkwor Israel M. Ajayi Paul Akinniyi Akinduti Oluwadurotimi S. Aworunse Ibukun Ajiboye Olugbenga S. Taiwo Bosede Temitope Adekeye Olubukola Oziegbe Adetutu O. Bello Eze Frank Ahuekwe Joshua Oyekanmi Olanrewaju Olufowobi Margaret Ikhiwili Oniha Oyewumi Oshamika Samuel A. Ejoh Adeyemi G. Adewale Olayemi O. Akinnola Solomon U. Oranusi Jacob O. Popoola Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria Data in Brief African locust bean Breeding Conservation Genetic diversity Phylogenetic rbcL |
| title | Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria |
| title_full | Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria |
| title_fullStr | Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria |
| title_full_unstemmed | Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria |
| title_short | Dataset on rbcL-based intra-specific diversity and population structure of Parkia biglobosa (Jacq.) in Nigeria |
| title_sort | dataset on rbcl based intra specific diversity and population structure of parkia biglobosa jacq in nigeria |
| topic | African locust bean Breeding Conservation Genetic diversity Phylogenetic rbcL |
| url | http://www.sciencedirect.com/science/article/pii/S2352340924001173 |
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