Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis
This study presents the chloroplast genome of Pluchea indica(L.) Less, Asteraceae, one wide distributed species of mangrove associates plant in China, which was assembled and analyzed by de novo assembly using whole-genome sequencing data. The accessing NC_015621 was used as a reference sequence in...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1413299 |
| _version_ | 1797640773593726976 |
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| author | Ying Zhang Jingwen Zhang Yong Yang Qiang Liu |
| author_facet | Ying Zhang Jingwen Zhang Yong Yang Qiang Liu |
| author_sort | Ying Zhang |
| collection | DOAJ |
| description | This study presents the chloroplast genome of Pluchea indica(L.) Less, Asteraceae, one wide distributed species of mangrove associates plant in China, which was assembled and analyzed by de novo assembly using whole-genome sequencing data. The accessing NC_015621 was used as a reference sequence in this study. The size of the complete chloroplast genome was found to be 152,298 bp in length, comprising a large single copy region (LSC) of 84,127bp, a small single copy region (SSC) 18,068 bp, and inverted repeat regions (IRS) of 25,051bp. A total of 128 genes, including 84 protein-coding genes, 36 tRNA genes and eight rRNA genes, were predicted from the chloroplast genomes. Among them, 17 genes occur in IRS, containing six protein-coding genes, seven tRNA genes and four rRNA genes. The GC content of P. indica is 37.49%. The phylogenetic analysis with four Asterids species and five other species revealed that P. indica was clusted with Ageratina adenophora. |
| first_indexed | 2024-03-11T13:35:34Z |
| format | Article |
| id | doaj.art-9bbe9914fb8241ddbfa70153795e1822 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:34Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9bbe9914fb8241ddbfa70153795e18222023-11-02T15:42:59ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012291891910.1080/23802359.2017.14132991413299Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysisYing Zhang0Jingwen Zhang1Yong Yang2Qiang Liu3Hainan Normal UniversityHainan Normal UniversityHainan Normal UniversityHainan Normal UniversityThis study presents the chloroplast genome of Pluchea indica(L.) Less, Asteraceae, one wide distributed species of mangrove associates plant in China, which was assembled and analyzed by de novo assembly using whole-genome sequencing data. The accessing NC_015621 was used as a reference sequence in this study. The size of the complete chloroplast genome was found to be 152,298 bp in length, comprising a large single copy region (LSC) of 84,127bp, a small single copy region (SSC) 18,068 bp, and inverted repeat regions (IRS) of 25,051bp. A total of 128 genes, including 84 protein-coding genes, 36 tRNA genes and eight rRNA genes, were predicted from the chloroplast genomes. Among them, 17 genes occur in IRS, containing six protein-coding genes, seven tRNA genes and four rRNA genes. The GC content of P. indica is 37.49%. The phylogenetic analysis with four Asterids species and five other species revealed that P. indica was clusted with Ageratina adenophora.http://dx.doi.org/10.1080/23802359.2017.1413299chloroplast genomeillumine sequencingpluchea indica (l.) lessphylogenetic analysis |
| spellingShingle | Ying Zhang Jingwen Zhang Yong Yang Qiang Liu Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis Mitochondrial DNA. Part B. Resources chloroplast genome illumine sequencing pluchea indica (l.) less phylogenetic analysis |
| title | Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis |
| title_full | Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis |
| title_fullStr | Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis |
| title_full_unstemmed | Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis |
| title_short | Complete chloroplast genome of Pluchea indica (L.) Less. (Asteraceae) and its phylogenetic analysis |
| title_sort | complete chloroplast genome of pluchea indica l less asteraceae and its phylogenetic analysis |
| topic | chloroplast genome illumine sequencing pluchea indica (l.) less phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1413299 |
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