SeQual-Stream: approaching stream processing to quality control of NGS datasets

SeQual-Stream: approaching stream processing to quality control of NGS datasets

Abstract Background Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, needing to have the complete genetic dataset before processing can even begin. This limi...

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Bibliographic Details
Main Authors: Óscar Castellanos-Rodríguez, Roberto R. Expósito, Juan Touriño
Format: Article
Language:English
Published: BMC 2023-10-01
Series:BMC Bioinformatics
Subjects:
Quality control
Big data
Stream processing
Apache Spark
Next generation sequencing (NGS)
Online Access:https://doi.org/10.1186/s12859-023-05530-7

Internet

https://doi.org/10.1186/s12859-023-05530-7

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