Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)
In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1624649 |
| _version_ | 1797639778236104704 |
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| author | Wei Tan Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen |
| author_facet | Wei Tan Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen |
| author_sort | Wei Tan |
| collection | DOAJ |
| description | In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae. |
| first_indexed | 2024-03-11T13:21:45Z |
| format | Article |
| id | doaj.art-9c4e26ce5c414d8c99f1086a61a280f6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:45Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9c4e26ce5c414d8c99f1086a61a280f62023-11-03T10:28:34ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422260226110.1080/23802359.2019.16246491624649Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885)Wei Tan0Rongxia Wang1Hongtao Liu2Yongbo Wang3Hongji Ke4Jiawei Fan5Fuxiao Chen6Hainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesIn this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae.http://dx.doi.org/10.1080/23802359.2019.1624649chloroplast genomehalymenia maculataphylogenetic analysis |
| spellingShingle | Wei Tan Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) Mitochondrial DNA. Part B. Resources chloroplast genome halymenia maculata phylogenetic analysis |
| title | Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) |
| title_full | Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) |
| title_fullStr | Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) |
| title_full_unstemmed | Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) |
| title_short | Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885) |
| title_sort | complete chloroplast genome of red seaweed halymenia maculata j agardh 1885 |
| topic | chloroplast genome halymenia maculata phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1624649 |
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