Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma
Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present....
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2022-10-01
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| Series: | Frontiers in Genetics |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fgene.2022.975419/full |
| _version_ | 1811344645508038656 |
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| author | Yifan Xu Chao Wang Shifang Li Han Zhou Yugong Feng |
| author_facet | Yifan Xu Chao Wang Shifang Li Han Zhou Yugong Feng |
| author_sort | Yifan Xu |
| collection | DOAJ |
| description | Cuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy. |
| first_indexed | 2024-04-13T19:50:13Z |
| format | Article |
| id | doaj.art-9c574b5d090d466cb2bb79303254134b |
| institution | Directory Open Access Journal |
| issn | 1664-8021 |
| language | English |
| last_indexed | 2024-04-13T19:50:13Z |
| publishDate | 2022-10-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Genetics |
| spelling | doaj.art-9c574b5d090d466cb2bb79303254134b2022-12-22T02:32:34ZengFrontiers Media S.A.Frontiers in Genetics1664-80212022-10-011310.3389/fgene.2022.975419975419Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade gliomaYifan XuChao WangShifang LiHan ZhouYugong FengCuproptosis is a newly discovered new mechanism of programmed cell death, and its unique pathway to regulate cell death is thought to have a unique role in understanding cancer progression and guiding cancer therapy. However, this regulation has not been studied in low grade glioma (LGG) at present. In this study, data on low grade glioma patients were downloaded from the TCGA database. We screened the genes related to cuproptosis from the published papers and confirmed the lncRNAs related to them. We applied univariate/multivariate, and LASSO regression algorithms, finally identified 11 lncRNAs for constructing prognosis prediction models, and constructed a risk scoring model. The reliability and validity test of the model indicated that the model could well distinguish the prognosis and survival of LGG patients. Furthermore, the analyses of immunotherapy, immune microenvironment, as well as functional enrichment were also performed. Finally, we verified the expression of these six prognostic key lncRNAs using real-time polymerase chain reaction (RT-PCR). In conclusion, this study is the first analysis based on cuproptosis-related lncRNAs in LGG and aims to open up new directions for LGG therapy.https://www.frontiersin.org/articles/10.3389/fgene.2022.975419/fulllow grade gliomalncRNAcuproptosisimmune therapybioinformatics |
| spellingShingle | Yifan Xu Chao Wang Shifang Li Han Zhou Yugong Feng Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma Frontiers in Genetics low grade glioma lncRNA cuproptosis immune therapy bioinformatics |
| title | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
| title_full | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
| title_fullStr | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
| title_full_unstemmed | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
| title_short | Prognosis and immune response of a cuproptosis-related lncRNA signature in low grade glioma |
| title_sort | prognosis and immune response of a cuproptosis related lncrna signature in low grade glioma |
| topic | low grade glioma lncRNA cuproptosis immune therapy bioinformatics |
| url | https://www.frontiersin.org/articles/10.3389/fgene.2022.975419/full |
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