Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil
Elaeidobius kamerunicus Faust. (Coleoptera: Curculionidae) is an essential insect pollinator in oil palm plantations. Recently, researches have been undertaken to improve pollination efficiency using this species. A fundamental understanding of the genes related to this pollinator behavior is necess...
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| Format: | Article |
| Language: | English |
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Elsevier
2021-02-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340921000317 |
| _version_ | 1818721542571294720 |
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| author | Ardha Apriyanto Van Basten Tambunan |
| author_facet | Ardha Apriyanto Van Basten Tambunan |
| author_sort | Ardha Apriyanto |
| collection | DOAJ |
| description | Elaeidobius kamerunicus Faust. (Coleoptera: Curculionidae) is an essential insect pollinator in oil palm plantations. Recently, researches have been undertaken to improve pollination efficiency using this species. A fundamental understanding of the genes related to this pollinator behavior is necessary to achieve this goal. Here, we present the draft genome sequence, annotation, and simple sequence repeat (SSR) marker data for this pollinator. In total, 34.97 Gb of sequence data from one male individual (monoisolate) were obtained using Illumina short-read platform NextSeq 500. The draft genome assembly was found to be 269.79 Mb and about 59.9% of completeness based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment. Functional gene annotation predicted about 26.566 genes. Also, a total of 281.668 putative SSR markers were identified. This draft genome sequence is a valuable resource for understanding the population genetics, phylogenetics, dispersal patterns, and behavior of this species. |
| first_indexed | 2024-12-17T20:40:23Z |
| format | Article |
| id | doaj.art-9c8540aa8f08403e9000f97fa707089b |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-17T20:40:23Z |
| publishDate | 2021-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-9c8540aa8f08403e9000f97fa707089b2022-12-21T21:33:20ZengElsevierData in Brief2352-34092021-02-0134106745Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevilArdha Apriyanto0Van Basten Tambunan1Research and Development, PT. Astra Agro Lestari Tbk, Jl. Puloayang Raya Blok OR I, Kawasan Industri Pulogadung, Jakarta Timur, Indonesia; Biopolymer Analytics, Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, Building 20, Potsdam-Golm, Germany; Corresponding author.Research and Development, PT. Astra Agro Lestari Tbk, Jl. Puloayang Raya Blok OR I, Kawasan Industri Pulogadung, Jakarta Timur, IndonesiaElaeidobius kamerunicus Faust. (Coleoptera: Curculionidae) is an essential insect pollinator in oil palm plantations. Recently, researches have been undertaken to improve pollination efficiency using this species. A fundamental understanding of the genes related to this pollinator behavior is necessary to achieve this goal. Here, we present the draft genome sequence, annotation, and simple sequence repeat (SSR) marker data for this pollinator. In total, 34.97 Gb of sequence data from one male individual (monoisolate) were obtained using Illumina short-read platform NextSeq 500. The draft genome assembly was found to be 269.79 Mb and about 59.9% of completeness based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment. Functional gene annotation predicted about 26.566 genes. Also, a total of 281.668 putative SSR markers were identified. This draft genome sequence is a valuable resource for understanding the population genetics, phylogenetics, dispersal patterns, and behavior of this species.http://www.sciencedirect.com/science/article/pii/S2352340921000317Whole-genome sequencingNGSSimple Sequence RepeatWeevilCurculionidaeOil Palm |
| spellingShingle | Ardha Apriyanto Van Basten Tambunan Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil Data in Brief Whole-genome sequencing NGS Simple Sequence Repeat Weevil Curculionidae Oil Palm |
| title | Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil |
| title_full | Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil |
| title_fullStr | Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil |
| title_full_unstemmed | Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil |
| title_short | Draft genome sequence, annotation, and SSR mining data of Elaeidobius kamerunicus Faust., an essential oil palm pollinating weevil |
| title_sort | draft genome sequence annotation and ssr mining data of elaeidobius kamerunicus faust an essential oil palm pollinating weevil |
| topic | Whole-genome sequencing NGS Simple Sequence Repeat Weevil Curculionidae Oil Palm |
| url | http://www.sciencedirect.com/science/article/pii/S2352340921000317 |
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