Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks

Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks

Abstract Background Salmonella spp. is a major foodborne pathogen with a wide variety of serovars associated with human cases and food sources. Nevertheless, in Europe a panel of ten serovars is responsible for up to 80% of confirmed human cases. Clustering studies by single nucleotide polymorphism...

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Bibliographic Details
Main Authors: Emeline Cherchame, Laurent Guillier, Renaud Lailler, Marie-Leone Vignaud, Nathalie Jourdan-Da Silva, Simon Le Hello, François-Xavier Weill, Sabrina Cadel-Six
Format: Article
Language:English
Published: BMC 2022-03-01
Series:BMC Genomics
Subjects:
Salmonella Welikade
Reference genome
Outbreak characterization
EnteroBase analysis
Core genome SNP analysis
ClonalFrameML
Online Access:https://doi.org/10.1186/s12864-022-08439-2

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