1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices
Abstract Basal stem rot disease (BSR) caused by G. boninense affects most oil palm plants in Southeast Asia. This disease can be fatal to palm oil production. BSR shows no signs on the tree in the early stages of infection. Therefore, it is essential to find an approach that can detect BSR disease i...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2022-12-01
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| Series: | Scientific Reports |
| Online Access: | https://doi.org/10.1038/s41598-022-25450-5 |
| _version_ | 1811302201515048960 |
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| author | Adi Pancoro Elfina Karima Ardha Apriyanto Yunus Effendi |
| author_facet | Adi Pancoro Elfina Karima Ardha Apriyanto Yunus Effendi |
| author_sort | Adi Pancoro |
| collection | DOAJ |
| description | Abstract Basal stem rot disease (BSR) caused by G. boninense affects most oil palm plants in Southeast Asia. This disease can be fatal to palm oil production. BSR shows no signs on the tree in the early stages of infection. Therefore, it is essential to find an approach that can detect BSR disease in oil palm, especially at any level of disease severity in the field. This study aims to identify biomarkers of BSR disease in oil palm stem tissue based on various disease severity indices in the field using 1H NMR-based metabolomics analysis. The crude extract of oil palm stem tissue with four disease severity indices was analyzed by 1H NMR metabolomics. Approximately 90 metabolites from oil palm stem tissue were identified.Twenty of these were identified as metabolites that significantly differentiated the four disease severity indices. These metabolites include the organic acid group, the carbohydrate group, the organoheterocyclic compound group, and the benzoid group. In addition, different tentative biomarkers for different disease severity indices were also identified. These tentative biomarkers consist of groups of organic acids, carbohydrates, organoheterocyclic compounds, nitrogenous organic compounds, and benzene. There are five pathways in oil palm that are potentially affected by BSR disease. |
| first_indexed | 2024-04-13T07:23:49Z |
| format | Article |
| id | doaj.art-9cf9edce29fb44e2ae09713b222849e4 |
| institution | Directory Open Access Journal |
| issn | 2045-2322 |
| language | English |
| last_indexed | 2024-04-13T07:23:49Z |
| publishDate | 2022-12-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Reports |
| spelling | doaj.art-9cf9edce29fb44e2ae09713b222849e42022-12-22T02:56:33ZengNature PortfolioScientific Reports2045-23222022-12-0112111310.1038/s41598-022-25450-51H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity IndicesAdi Pancoro0Elfina Karima1Ardha Apriyanto2Yunus Effendi3School of Life Sciences and Technology, Bandung Institute of TechnologySchool of Life Sciences and Technology, Bandung Institute of TechnologyAstra Agro Lestari Tbk, Research and DevelopmentBiological Science Department, Al-Azhar Indonesia UniversityAbstract Basal stem rot disease (BSR) caused by G. boninense affects most oil palm plants in Southeast Asia. This disease can be fatal to palm oil production. BSR shows no signs on the tree in the early stages of infection. Therefore, it is essential to find an approach that can detect BSR disease in oil palm, especially at any level of disease severity in the field. This study aims to identify biomarkers of BSR disease in oil palm stem tissue based on various disease severity indices in the field using 1H NMR-based metabolomics analysis. The crude extract of oil palm stem tissue with four disease severity indices was analyzed by 1H NMR metabolomics. Approximately 90 metabolites from oil palm stem tissue were identified.Twenty of these were identified as metabolites that significantly differentiated the four disease severity indices. These metabolites include the organic acid group, the carbohydrate group, the organoheterocyclic compound group, and the benzoid group. In addition, different tentative biomarkers for different disease severity indices were also identified. These tentative biomarkers consist of groups of organic acids, carbohydrates, organoheterocyclic compounds, nitrogenous organic compounds, and benzene. There are five pathways in oil palm that are potentially affected by BSR disease.https://doi.org/10.1038/s41598-022-25450-5 |
| spellingShingle | Adi Pancoro Elfina Karima Ardha Apriyanto Yunus Effendi 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices Scientific Reports |
| title | 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices |
| title_full | 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices |
| title_fullStr | 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices |
| title_full_unstemmed | 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices |
| title_short | 1H NMR metabolomics analysis of oil palm stem tissue infected by Ganoderma boninense based on field severity Indices |
| title_sort | 1h nmr metabolomics analysis of oil palm stem tissue infected by ganoderma boninense based on field severity indices |
| url | https://doi.org/10.1038/s41598-022-25450-5 |
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